miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 3' -55.4 NC_005264.1 + 30072 0.68 0.866595
Target:  5'- ---cCUCGUCGgcgcCGCCGCGCccGGACa -3'
miRNA:   3'- acauGAGCAGUac--GCGGCGCG--UCUGg -5'
24487 3' -55.4 NC_005264.1 + 136461 0.69 0.800854
Target:  5'- --gGCcgCGcUCAgagacgGCGCCGCGCAGccuGCCg -3'
miRNA:   3'- acaUGa-GC-AGUa-----CGCGGCGCGUC---UGG- -5'
24487 3' -55.4 NC_005264.1 + 19908 0.69 0.809685
Target:  5'- gGUGCUUuGUgGUgGCGCCGUGcCAGuACCu -3'
miRNA:   3'- aCAUGAG-CAgUA-CGCGGCGC-GUC-UGG- -5'
24487 3' -55.4 NC_005264.1 + 67077 0.69 0.809685
Target:  5'- aGUACUCG-CA--CGCCGCGUacAGAUCc -3'
miRNA:   3'- aCAUGAGCaGUacGCGGCGCG--UCUGG- -5'
24487 3' -55.4 NC_005264.1 + 157168 0.69 0.818357
Target:  5'- cUGUACUCGUgggaacgcagCAUGCgugcgacuaccGCCGCGCuguggGGACa -3'
miRNA:   3'- -ACAUGAGCA----------GUACG-----------CGGCGCG-----UCUGg -5'
24487 3' -55.4 NC_005264.1 + 138204 0.69 0.82686
Target:  5'- gUGgggAUUaagCAUGCGCUGCGCGguGACCa -3'
miRNA:   3'- -ACa--UGAgcaGUACGCGGCGCGU--CUGG- -5'
24487 3' -55.4 NC_005264.1 + 12616 0.68 0.843332
Target:  5'- -uUACUCGU----CGCCGCGCAaGACUa -3'
miRNA:   3'- acAUGAGCAguacGCGGCGCGU-CUGG- -5'
24487 3' -55.4 NC_005264.1 + 64728 0.68 0.859042
Target:  5'- uUGggGCUCGgcgcCGUGCcCCGCGCAagGAUCg -3'
miRNA:   3'- -ACa-UGAGCa---GUACGcGGCGCGU--CUGG- -5'
24487 3' -55.4 NC_005264.1 + 162683 0.68 0.865849
Target:  5'- gUGUACg-GUCGgcGCGCUGCGCGccggcguuaaggcGGCCg -3'
miRNA:   3'- -ACAUGagCAGUa-CGCGGCGCGU-------------CUGG- -5'
24487 3' -55.4 NC_005264.1 + 88531 0.69 0.800854
Target:  5'- --gACUCGUUG-GCcauGCCGCGCgccAGACCg -3'
miRNA:   3'- acaUGAGCAGUaCG---CGGCGCG---UCUGG- -5'
24487 3' -55.4 NC_005264.1 + 31125 0.7 0.791871
Target:  5'- --cACgagCGcCAgcaaCGCCGCGCAGGCCc -3'
miRNA:   3'- acaUGa--GCaGUac--GCGGCGCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 47536 0.7 0.773486
Target:  5'- --aGCUCGUCAggaaGgGCUGCGCGGgACg -3'
miRNA:   3'- acaUGAGCAGUa---CgCGGCGCGUC-UGg -5'
24487 3' -55.4 NC_005264.1 + 8322 0.74 0.533944
Target:  5'- --cGCUUGUUugcgcgcggcauGUGCGCCcCGCAGACCu -3'
miRNA:   3'- acaUGAGCAG------------UACGCGGcGCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 146330 0.74 0.540864
Target:  5'- uUGUACcaucCGUC-UGCGCCGgcgugccucgacccCGCAGGCCa -3'
miRNA:   3'- -ACAUGa---GCAGuACGCGGC--------------GCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 49252 0.72 0.685596
Target:  5'- cUGUGCUCGUacaagcuaaaCA-GCGUCGCGgAGACg -3'
miRNA:   3'- -ACAUGAGCA----------GUaCGCGGCGCgUCUGg -5'
24487 3' -55.4 NC_005264.1 + 64141 0.71 0.695657
Target:  5'- --gGCUCGcCAcgGCGCCGCGauccGGCCg -3'
miRNA:   3'- acaUGAGCaGUa-CGCGGCGCgu--CUGG- -5'
24487 3' -55.4 NC_005264.1 + 135180 0.71 0.705665
Target:  5'- cGUAcCUCGgucCGaGCGCCGCGU-GGCCa -3'
miRNA:   3'- aCAU-GAGCa--GUaCGCGGCGCGuCUGG- -5'
24487 3' -55.4 NC_005264.1 + 84157 0.71 0.735283
Target:  5'- aGUGgUCG-CA-GCGCgCGCGCcGGACCu -3'
miRNA:   3'- aCAUgAGCaGUaCGCG-GCGCG-UCUGG- -5'
24487 3' -55.4 NC_005264.1 + 116967 0.7 0.764101
Target:  5'- gUGUcGCUUG-CAUugGCGgCGCGCAGACUc -3'
miRNA:   3'- -ACA-UGAGCaGUA--CGCgGCGCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 42009 0.7 0.773486
Target:  5'- cGUGCUCGUCGgccacgGCGgcagugucgaCGCGCAcgcGGCCu -3'
miRNA:   3'- aCAUGAGCAGUa-----CGCg---------GCGCGU---CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.