miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 3' -55.4 NC_005264.1 + 123192 0.66 0.944329
Target:  5'- uUGUACUUGgacgagGCCGCGCGGcaaaACCa -3'
miRNA:   3'- -ACAUGAGCaguacgCGGCGCGUC----UGG- -5'
24487 3' -55.4 NC_005264.1 + 33507 0.67 0.913338
Target:  5'- aGUGCgCGUCGcUGCGCC-CgGUAGGCg -3'
miRNA:   3'- aCAUGaGCAGU-ACGCGGcG-CGUCUGg -5'
24487 3' -55.4 NC_005264.1 + 123477 0.67 0.907345
Target:  5'- aUGUACggG-CAUGCggugGCCGCGCGGuuGCUg -3'
miRNA:   3'- -ACAUGagCaGUACG----CGGCGCGUC--UGG- -5'
24487 3' -55.4 NC_005264.1 + 45827 1.12 0.002138
Target:  5'- cUGUACUCGUCAUGCGCCGCGCAGACCg -3'
miRNA:   3'- -ACAUGAGCAGUACGCGGCGCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 28293 0.66 0.939755
Target:  5'- gGUAgaCGUuguuucauaccCAUGUGCCGCGC--GCCu -3'
miRNA:   3'- aCAUgaGCA-----------GUACGCGGCGCGucUGG- -5'
24487 3' -55.4 NC_005264.1 + 67383 0.66 0.938337
Target:  5'- cGgcgGCgUCGUCuacgAUGCGCCGCaucuccgggcaaccGCAGAgCa -3'
miRNA:   3'- aCa--UG-AGCAG----UACGCGGCG--------------CGUCUgG- -5'
24487 3' -55.4 NC_005264.1 + 9602 0.66 0.934945
Target:  5'- aGUACaggCGacgCGaacUGCGCUGaGCAGGCCa -3'
miRNA:   3'- aCAUGa--GCa--GU---ACGCGGCgCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 6088 0.66 0.929899
Target:  5'- --gGCUCGcgUCGUaGCGgCG-GCAGACCc -3'
miRNA:   3'- acaUGAGC--AGUA-CGCgGCgCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 12431 0.66 0.924616
Target:  5'- cGUGCUUGgag-GCGCgGUGCGGuCUa -3'
miRNA:   3'- aCAUGAGCaguaCGCGgCGCGUCuGG- -5'
24487 3' -55.4 NC_005264.1 + 106429 0.67 0.913338
Target:  5'- --aGCUCGaCG-GCGCCGCGCucGAUa -3'
miRNA:   3'- acaUGAGCaGUaCGCGGCGCGu-CUGg -5'
24487 3' -55.4 NC_005264.1 + 120085 0.66 0.919095
Target:  5'- --gGCUagcgggaGUCGUGCccaccggguGCCGCGCAGAa- -3'
miRNA:   3'- acaUGAg------CAGUACG---------CGGCGCGUCUgg -5'
24487 3' -55.4 NC_005264.1 + 46618 0.66 0.929899
Target:  5'- --cAC-CGUCGUGgGaCCGCGU-GGCCg -3'
miRNA:   3'- acaUGaGCAGUACgC-GGCGCGuCUGG- -5'
24487 3' -55.4 NC_005264.1 + 83396 0.66 0.939755
Target:  5'- --cGCUCGUCGUcugcGCGCCGCG-GGuCg -3'
miRNA:   3'- acaUGAGCAGUA----CGCGGCGCgUCuGg -5'
24487 3' -55.4 NC_005264.1 + 31829 0.66 0.919095
Target:  5'- cGUACUCugcc-GUGCCGCGCGcGGCa -3'
miRNA:   3'- aCAUGAGcaguaCGCGGCGCGU-CUGg -5'
24487 3' -55.4 NC_005264.1 + 95806 0.66 0.939755
Target:  5'- --cGCUuaCGUCggGgGCCuGCGCAaGGCCg -3'
miRNA:   3'- acaUGA--GCAGuaCgCGG-CGCGU-CUGG- -5'
24487 3' -55.4 NC_005264.1 + 154623 0.66 0.929899
Target:  5'- cGUACUCGgacCA-GCgGCCGCGgGGcauaauGCCa -3'
miRNA:   3'- aCAUGAGCa--GUaCG-CGGCGCgUC------UGG- -5'
24487 3' -55.4 NC_005264.1 + 138324 0.66 0.919095
Target:  5'- aGUugUgGUCAUgGCGCgUGCGC-GACa -3'
miRNA:   3'- aCAugAgCAGUA-CGCG-GCGCGuCUGg -5'
24487 3' -55.4 NC_005264.1 + 89758 0.67 0.907345
Target:  5'- --cACcCGUCGaaguagaGaUGCCGCGCGGGCCa -3'
miRNA:   3'- acaUGaGCAGUa------C-GCGGCGCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 95653 0.66 0.939755
Target:  5'- --gGCgccgCGUCAUaGCGCU--GCAGGCCg -3'
miRNA:   3'- acaUGa---GCAGUA-CGCGGcgCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 28130 0.66 0.934945
Target:  5'- aUGUAaUCGUC-UGCGCUuugauucgccaGUGCGGGCg -3'
miRNA:   3'- -ACAUgAGCAGuACGCGG-----------CGCGUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.