miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 3' -55.4 NC_005264.1 + 45827 1.12 0.002138
Target:  5'- cUGUACUCGUCAUGCGCCGCGCAGACCg -3'
miRNA:   3'- -ACAUGAGCAGUACGCGGCGCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 143732 0.85 0.127935
Target:  5'- aGUGCUCGUCuccGCGCCGCcGCGGugCa -3'
miRNA:   3'- aCAUGAGCAGua-CGCGGCG-CGUCugG- -5'
24487 3' -55.4 NC_005264.1 + 96339 0.84 0.161114
Target:  5'- --aGCUCGUCGagcGCGCCGCGCAGcCCg -3'
miRNA:   3'- acaUGAGCAGUa--CGCGGCGCGUCuGG- -5'
24487 3' -55.4 NC_005264.1 + 103366 0.81 0.227609
Target:  5'- aGUACaugccagUCGUCAUGCcuGCCGCGCGGgGCCg -3'
miRNA:   3'- aCAUG-------AGCAGUACG--CGGCGCGUC-UGG- -5'
24487 3' -55.4 NC_005264.1 + 8322 0.74 0.533944
Target:  5'- --cGCUUGUUugcgcgcggcauGUGCGCCcCGCAGACCu -3'
miRNA:   3'- acaUGAGCAG------------UACGCGGcGCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 146330 0.74 0.540864
Target:  5'- uUGUACcaucCGUC-UGCGCCGgcgugccucgacccCGCAGGCCa -3'
miRNA:   3'- -ACAUGa---GCAGuACGCGGC--------------GCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 136349 0.74 0.5638
Target:  5'- --aGCUgGUUcgGCGCCGCaCGGGCCc -3'
miRNA:   3'- acaUGAgCAGuaCGCGGCGcGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 56728 0.74 0.5638
Target:  5'- -uUGCUCuGUCGUGCcuuuCCGCGgAGGCCg -3'
miRNA:   3'- acAUGAG-CAGUACGc---GGCGCgUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 44259 0.72 0.634804
Target:  5'- aGUGCUguucggcgCGUCA--CGCCGCGCGGAUg -3'
miRNA:   3'- aCAUGA--------GCAGUacGCGGCGCGUCUGg -5'
24487 3' -55.4 NC_005264.1 + 56807 0.72 0.665351
Target:  5'- -aUGCuUUGUCcUGCGCUGCGCGGcgGCCc -3'
miRNA:   3'- acAUG-AGCAGuACGCGGCGCGUC--UGG- -5'
24487 3' -55.4 NC_005264.1 + 158063 0.72 0.685596
Target:  5'- gGUGCgCGaacgGCGCCGCGCAGAa- -3'
miRNA:   3'- aCAUGaGCaguaCGCGGCGCGUCUgg -5'
24487 3' -55.4 NC_005264.1 + 49252 0.72 0.685596
Target:  5'- cUGUGCUCGUacaagcuaaaCA-GCGUCGCGgAGACg -3'
miRNA:   3'- -ACAUGAGCA----------GUaCGCGGCGCgUCUGg -5'
24487 3' -55.4 NC_005264.1 + 64141 0.71 0.695657
Target:  5'- --gGCUCGcCAcgGCGCCGCGauccGGCCg -3'
miRNA:   3'- acaUGAGCaGUa-CGCGGCGCgu--CUGG- -5'
24487 3' -55.4 NC_005264.1 + 135180 0.71 0.705665
Target:  5'- cGUAcCUCGgucCGaGCGCCGCGU-GGCCa -3'
miRNA:   3'- aCAU-GAGCa--GUaCGCGGCGCGuCUGG- -5'
24487 3' -55.4 NC_005264.1 + 84157 0.71 0.735283
Target:  5'- aGUGgUCG-CA-GCGCgCGCGCcGGACCu -3'
miRNA:   3'- aCAUgAGCaGUaCGCG-GCGCG-UCUGG- -5'
24487 3' -55.4 NC_005264.1 + 50800 0.7 0.74499
Target:  5'- uUGaACUUGUCGgaucgGCGCgCGCGCAGGu- -3'
miRNA:   3'- -ACaUGAGCAGUa----CGCG-GCGCGUCUgg -5'
24487 3' -55.4 NC_005264.1 + 116967 0.7 0.764101
Target:  5'- gUGUcGCUUG-CAUugGCGgCGCGCAGACUc -3'
miRNA:   3'- -ACA-UGAGCaGUA--CGCgGCGCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 47536 0.7 0.773486
Target:  5'- --aGCUCGUCAggaaGgGCUGCGCGGgACg -3'
miRNA:   3'- acaUGAGCAGUa---CgCGGCGCGUC-UGg -5'
24487 3' -55.4 NC_005264.1 + 42009 0.7 0.773486
Target:  5'- cGUGCUCGUCGgccacgGCGgcagugucgaCGCGCAcgcGGCCu -3'
miRNA:   3'- aCAUGAGCAGUa-----CGCg---------GCGCGU---CUGG- -5'
24487 3' -55.4 NC_005264.1 + 78674 0.7 0.773486
Target:  5'- aGUaaACagGUCcgGCGCgCGCGCugcGACCa -3'
miRNA:   3'- aCA--UGagCAGuaCGCG-GCGCGu--CUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.