miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 3' -55.4 NC_005264.1 + 6088 0.66 0.929899
Target:  5'- --gGCUCGcgUCGUaGCGgCG-GCAGACCc -3'
miRNA:   3'- acaUGAGC--AGUA-CGCgGCgCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 6770 0.67 0.894661
Target:  5'- aUGUAUUCGcgCA-GCGCCG-GCAuGGCUa -3'
miRNA:   3'- -ACAUGAGCa-GUaCGCGGCgCGU-CUGG- -5'
24487 3' -55.4 NC_005264.1 + 8322 0.74 0.533944
Target:  5'- --cGCUUGUUugcgcgcggcauGUGCGCCcCGCAGACCu -3'
miRNA:   3'- acaUGAGCAG------------UACGCGGcGCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 8706 0.67 0.907345
Target:  5'- --aACUCGcUC-UGCGCgCGCGU-GGCCg -3'
miRNA:   3'- acaUGAGC-AGuACGCG-GCGCGuCUGG- -5'
24487 3' -55.4 NC_005264.1 + 9602 0.66 0.934945
Target:  5'- aGUACaggCGacgCGaacUGCGCUGaGCAGGCCa -3'
miRNA:   3'- aCAUGa--GCa--GU---ACGCGGCgCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 10513 0.68 0.874661
Target:  5'- gGUACUCGcCGagcggguccugugcgGCGCCGCccucaggggcGCGGAUCg -3'
miRNA:   3'- aCAUGAGCaGUa--------------CGCGGCG----------CGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 11660 0.66 0.944329
Target:  5'- -cUGCU-GUCGU-CGUCGCGCAauucGACCg -3'
miRNA:   3'- acAUGAgCAGUAcGCGGCGCGU----CUGG- -5'
24487 3' -55.4 NC_005264.1 + 12431 0.66 0.924616
Target:  5'- cGUGCUUGgag-GCGCgGUGCGGuCUa -3'
miRNA:   3'- aCAUGAGCaguaCGCGgCGCGUCuGG- -5'
24487 3' -55.4 NC_005264.1 + 12616 0.68 0.843332
Target:  5'- -uUACUCGU----CGCCGCGCAaGACUa -3'
miRNA:   3'- acAUGAGCAguacGCGGCGCGU-CUGG- -5'
24487 3' -55.4 NC_005264.1 + 15243 0.68 0.859042
Target:  5'- aGUGgUCGUucugCAUGCGCC-UGC-GACCg -3'
miRNA:   3'- aCAUgAGCA----GUACGCGGcGCGuCUGG- -5'
24487 3' -55.4 NC_005264.1 + 19908 0.69 0.809685
Target:  5'- gGUGCUUuGUgGUgGCGCCGUGcCAGuACCu -3'
miRNA:   3'- aCAUGAG-CAgUA-CGCGGCGC-GUC-UGG- -5'
24487 3' -55.4 NC_005264.1 + 20808 0.67 0.901118
Target:  5'- cGUGCaCGcCAUGCacGCCaaucGCGCGGACg -3'
miRNA:   3'- aCAUGaGCaGUACG--CGG----CGCGUCUGg -5'
24487 3' -55.4 NC_005264.1 + 26353 0.7 0.782746
Target:  5'- -uUAgUC-UUGUGCGCCGCGgCAGGCUg -3'
miRNA:   3'- acAUgAGcAGUACGCGGCGC-GUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 28130 0.66 0.934945
Target:  5'- aUGUAaUCGUC-UGCGCUuugauucgccaGUGCGGGCg -3'
miRNA:   3'- -ACAUgAGCAGuACGCGG-----------CGCGUCUGg -5'
24487 3' -55.4 NC_005264.1 + 28293 0.66 0.939755
Target:  5'- gGUAgaCGUuguuucauaccCAUGUGCCGCGC--GCCu -3'
miRNA:   3'- aCAUgaGCA-----------GUACGCGGCGCGucUGG- -5'
24487 3' -55.4 NC_005264.1 + 30072 0.68 0.866595
Target:  5'- ---cCUCGUCGgcgcCGCCGCGCccGGACa -3'
miRNA:   3'- acauGAGCAGUac--GCGGCGCG--UCUGg -5'
24487 3' -55.4 NC_005264.1 + 31125 0.7 0.791871
Target:  5'- --cACgagCGcCAgcaaCGCCGCGCAGGCCc -3'
miRNA:   3'- acaUGa--GCaGUac--GCGGCGCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 31829 0.66 0.919095
Target:  5'- cGUACUCugcc-GUGCCGCGCGcGGCa -3'
miRNA:   3'- aCAUGAGcaguaCGCGGCGCGU-CUGg -5'
24487 3' -55.4 NC_005264.1 + 33507 0.67 0.913338
Target:  5'- aGUGCgCGUCGcUGCGCC-CgGUAGGCg -3'
miRNA:   3'- aCAUGaGCAGU-ACGCGGcG-CGUCUGg -5'
24487 3' -55.4 NC_005264.1 + 36803 0.67 0.894661
Target:  5'- gGUACUgGagAggaGCCGcCGCGGGCCa -3'
miRNA:   3'- aCAUGAgCagUacgCGGC-GCGUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.