miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 3' -55.4 NC_005264.1 + 162683 0.68 0.865849
Target:  5'- gUGUACg-GUCGgcGCGCUGCGCGccggcguuaaggcGGCCg -3'
miRNA:   3'- -ACAUGagCAGUa-CGCGGCGCGU-------------CUGG- -5'
24487 3' -55.4 NC_005264.1 + 161670 0.66 0.924616
Target:  5'- cGUACccCaUCGcGCGCCG-GCAGACUg -3'
miRNA:   3'- aCAUGa-GcAGUaCGCGGCgCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 158063 0.72 0.685596
Target:  5'- gGUGCgCGaacgGCGCCGCGCAGAa- -3'
miRNA:   3'- aCAUGaGCaguaCGCGGCGCGUCUgg -5'
24487 3' -55.4 NC_005264.1 + 157168 0.69 0.818357
Target:  5'- cUGUACUCGUgggaacgcagCAUGCgugcgacuaccGCCGCGCuguggGGACa -3'
miRNA:   3'- -ACAUGAGCA----------GUACG-----------CGGCGCG-----UCUGg -5'
24487 3' -55.4 NC_005264.1 + 155829 0.67 0.894661
Target:  5'- gGUACUgGagAggaGCCGcCGCGGGCCa -3'
miRNA:   3'- aCAUGAgCagUacgCGGC-GCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 154623 0.66 0.929899
Target:  5'- cGUACUCGgacCA-GCgGCCGCGgGGcauaauGCCa -3'
miRNA:   3'- aCAUGAGCa--GUaCG-CGGCGCgUC------UGG- -5'
24487 3' -55.4 NC_005264.1 + 152534 0.67 0.913338
Target:  5'- aGUGCgCGUCGcUGCGCC-CgGUAGGCg -3'
miRNA:   3'- aCAUGaGCAGU-ACGCGGcG-CGUCUGg -5'
24487 3' -55.4 NC_005264.1 + 150855 0.66 0.919095
Target:  5'- cGUACUCugcc-GUGCCGCGCGcGGCa -3'
miRNA:   3'- aCAUGAGcaguaCGCGGCGCGU-CUGg -5'
24487 3' -55.4 NC_005264.1 + 147891 0.67 0.901118
Target:  5'- aUGgcCUCcagGUCG-GCuGCCGCGUAGACg -3'
miRNA:   3'- -ACauGAG---CAGUaCG-CGGCGCGUCUGg -5'
24487 3' -55.4 NC_005264.1 + 146330 0.74 0.540864
Target:  5'- uUGUACcaucCGUC-UGCGCCGgcgugccucgacccCGCAGGCCa -3'
miRNA:   3'- -ACAUGa---GCAGuACGCGGC--------------GCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 143958 0.67 0.901118
Target:  5'- ---uCUCGUCAcaaGCCGCGguGGCa -3'
miRNA:   3'- acauGAGCAGUacgCGGCGCguCUGg -5'
24487 3' -55.4 NC_005264.1 + 143732 0.85 0.127935
Target:  5'- aGUGCUCGUCuccGCGCCGCcGCGGugCa -3'
miRNA:   3'- aCAUGAGCAGua-CGCGGCG-CGUCugG- -5'
24487 3' -55.4 NC_005264.1 + 140590 0.66 0.934945
Target:  5'- cUGUuacCUgGUUAgagGCGaCCGCcCAGACCg -3'
miRNA:   3'- -ACAu--GAgCAGUa--CGC-GGCGcGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 138324 0.66 0.919095
Target:  5'- aGUugUgGUCAUgGCGCgUGCGC-GACa -3'
miRNA:   3'- aCAugAgCAGUA-CGCG-GCGCGuCUGg -5'
24487 3' -55.4 NC_005264.1 + 138204 0.69 0.82686
Target:  5'- gUGgggAUUaagCAUGCGCUGCGCGguGACCa -3'
miRNA:   3'- -ACa--UGAgcaGUACGCGGCGCGU--CUGG- -5'
24487 3' -55.4 NC_005264.1 + 136903 0.67 0.887976
Target:  5'- cGUACgugagccgCGUCGUGCagugcaGCCGCuucgugGCGGACa -3'
miRNA:   3'- aCAUGa-------GCAGUACG------CGGCG------CGUCUGg -5'
24487 3' -55.4 NC_005264.1 + 136461 0.69 0.800854
Target:  5'- --gGCcgCGcUCAgagacgGCGCCGCGCAGccuGCCg -3'
miRNA:   3'- acaUGa-GC-AGUa-----CGCGGCGCGUC---UGG- -5'
24487 3' -55.4 NC_005264.1 + 136349 0.74 0.5638
Target:  5'- --aGCUgGUUcgGCGCCGCaCGGGCCc -3'
miRNA:   3'- acaUGAgCAGuaCGCGGCGcGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 135180 0.71 0.705665
Target:  5'- cGUAcCUCGgucCGaGCGCCGCGU-GGCCa -3'
miRNA:   3'- aCAU-GAGCa--GUaCGCGGCGCGuCUGG- -5'
24487 3' -55.4 NC_005264.1 + 131689 0.68 0.881067
Target:  5'- cGUcgGCUCG-CAaGCGuaGCGUGGGCCu -3'
miRNA:   3'- aCA--UGAGCaGUaCGCggCGCGUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.