miRNA display CGI


Results 41 - 60 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 5' -55.9 NC_005264.1 + 31833 0.67 0.882143
Target:  5'- ---cUCUGcCGUGCCGCgCGcgGCAAGa -3'
miRNA:   3'- gcucAGAC-GCGCGGCG-GUuaCGUUCg -5'
24487 5' -55.9 NC_005264.1 + 10525 0.67 0.867683
Target:  5'- gCGGGUCcugUGCgGCGCCGCCcucagGGGCg -3'
miRNA:   3'- -GCUCAG---ACG-CGCGGCGGuuacgUUCG- -5'
24487 5' -55.9 NC_005264.1 + 129552 0.67 0.867683
Target:  5'- gCGGGUCcugUGCgGCGCCGCCcucagGGGCg -3'
miRNA:   3'- -GCUCAG---ACG-CGCGGCGGuuacgUUCG- -5'
24487 5' -55.9 NC_005264.1 + 66490 0.67 0.867683
Target:  5'- uGAGUCc-CGUGCCGgCGAUggcgcgguacaGCGAGCg -3'
miRNA:   3'- gCUCAGacGCGCGGCgGUUA-----------CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 50527 0.67 0.867683
Target:  5'- uCGAuGUCUcUGCGCUGCCAAgagGCcugucgAAGCu -3'
miRNA:   3'- -GCU-CAGAcGCGCGGCGGUUa--CG------UUCG- -5'
24487 5' -55.9 NC_005264.1 + 155928 0.67 0.860134
Target:  5'- uCGAGUCUuuCGCGCaacggcagcaGCCAagGCAacAGCa -3'
miRNA:   3'- -GCUCAGAc-GCGCGg---------CGGUuaCGU--UCG- -5'
24487 5' -55.9 NC_005264.1 + 92629 0.67 0.860134
Target:  5'- uCGAGUCcuUGC-CGCCuGCCAgcacgaauGUGCGuaaGGCg -3'
miRNA:   3'- -GCUCAG--ACGcGCGG-CGGU--------UACGU---UCG- -5'
24487 5' -55.9 NC_005264.1 + 136783 0.67 0.860134
Target:  5'- uGAGUCcuuucgGCGCGUgGCCGGgcgGacaAAGCu -3'
miRNA:   3'- gCUCAGa-----CGCGCGgCGGUUa--Cg--UUCG- -5'
24487 5' -55.9 NC_005264.1 + 127006 0.67 0.860134
Target:  5'- aCGAagGUCcGUGCacggGCCGCCAuUGCGGGg -3'
miRNA:   3'- -GCU--CAGaCGCG----CGGCGGUuACGUUCg -5'
24487 5' -55.9 NC_005264.1 + 6403 0.67 0.860134
Target:  5'- uGGGauaUCgagGCGaucacCGCCGCCAGccGCAGGCa -3'
miRNA:   3'- gCUC---AGa--CGC-----GCGGCGGUUa-CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 109270 0.67 0.860134
Target:  5'- aCGcGUCggGCGCGUCGUacc-GCGAGCu -3'
miRNA:   3'- -GCuCAGa-CGCGCGGCGguuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 75221 0.67 0.860134
Target:  5'- aGGGUUUGCcucugGCGCgGCCAGgucguccgcguuUGCcGGCa -3'
miRNA:   3'- gCUCAGACG-----CGCGgCGGUU------------ACGuUCG- -5'
24487 5' -55.9 NC_005264.1 + 19531 0.67 0.860134
Target:  5'- uCGGGaCgGC-CGCCGCCAAcguUGCcgGAGCg -3'
miRNA:   3'- -GCUCaGaCGcGCGGCGGUU---ACG--UUCG- -5'
24487 5' -55.9 NC_005264.1 + 104423 0.67 0.852378
Target:  5'- aGAG-CUGgaaGCCGCCGAUGUcgaacGAGCa -3'
miRNA:   3'- gCUCaGACgcgCGGCGGUUACG-----UUCG- -5'
24487 5' -55.9 NC_005264.1 + 86974 0.67 0.852378
Target:  5'- aCGGGgggCguaaGCGCGCCuucaagggGCCAGU-CAAGCa -3'
miRNA:   3'- -GCUCa--Ga---CGCGCGG--------CGGUUAcGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 138299 0.68 0.844423
Target:  5'- aGAGUCUccggGCGCaCCGCag--GCAAGUu -3'
miRNA:   3'- gCUCAGA----CGCGcGGCGguuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 17711 0.68 0.841998
Target:  5'- uCGGGUguuagggaaauuacCUGCGCGCCGCgGcgcaaccuAUGcCAAGUu -3'
miRNA:   3'- -GCUCA--------------GACGCGCGGCGgU--------UAC-GUUCG- -5'
24487 5' -55.9 NC_005264.1 + 103013 0.68 0.836275
Target:  5'- uGAGcUCgcuugGUGCGgCGCUAccgGCAAGCa -3'
miRNA:   3'- gCUC-AGa----CGCGCgGCGGUua-CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 125159 0.68 0.836275
Target:  5'- uGGG-CUGCGaUGCuuguggggCGCCGAUGCcGGCa -3'
miRNA:   3'- gCUCaGACGC-GCG--------GCGGUUACGuUCG- -5'
24487 5' -55.9 NC_005264.1 + 158228 0.68 0.827941
Target:  5'- uCGAGaacGCGCcuacGCCGCCGcgGCGcuGGCg -3'
miRNA:   3'- -GCUCagaCGCG----CGGCGGUuaCGU--UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.