miRNA display CGI


Results 21 - 40 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 5' -55.9 NC_005264.1 + 93050 0.66 0.902157
Target:  5'- gCGuG-CUGCuGCGCUGCC-AUGC-GGCc -3'
miRNA:   3'- -GCuCaGACG-CGCGGCGGuUACGuUCG- -5'
24487 5' -55.9 NC_005264.1 + 109567 0.66 0.902157
Target:  5'- ----aCUGCgGCGCCGCgGGacaGCAAGCc -3'
miRNA:   3'- gcucaGACG-CGCGGCGgUUa--CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 124228 0.66 0.902157
Target:  5'- uCGuGUCU-CGCGCCGCg---GCGAGg -3'
miRNA:   3'- -GCuCAGAcGCGCGGCGguuaCGUUCg -5'
24487 5' -55.9 NC_005264.1 + 6526 0.66 0.902157
Target:  5'- gCGcGUUUGCaGCGCCGCguAcgggagacccUGCGAGUu -3'
miRNA:   3'- -GCuCAGACG-CGCGGCGguU----------ACGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 69405 0.66 0.902157
Target:  5'- gCGGGUagGCGCGCCuGCCGccGUcgGAGUa -3'
miRNA:   3'- -GCUCAgaCGCGCGG-CGGUuaCG--UUCG- -5'
24487 5' -55.9 NC_005264.1 + 16491 0.66 0.898319
Target:  5'- aCGAGUCacaugcgucauucgGCGCGCaCGCCGAgaguCAGGa -3'
miRNA:   3'- -GCUCAGa-------------CGCGCG-GCGGUUac--GUUCg -5'
24487 5' -55.9 NC_005264.1 + 85015 0.66 0.895714
Target:  5'- uCGGGgcaaCUGUccucuucguccGCGCCGUCAAUGCcgucuGCg -3'
miRNA:   3'- -GCUCa---GACG-----------CGCGGCGGUUACGuu---CG- -5'
24487 5' -55.9 NC_005264.1 + 35478 0.66 0.895714
Target:  5'- gCGAGagUGC-CGCgGCCGAUcGCGacGGCu -3'
miRNA:   3'- -GCUCagACGcGCGgCGGUUA-CGU--UCG- -5'
24487 5' -55.9 NC_005264.1 + 66202 0.66 0.895714
Target:  5'- gCGGG-CgGUGCGCCuCCGcgGCcAGCg -3'
miRNA:   3'- -GCUCaGaCGCGCGGcGGUuaCGuUCG- -5'
24487 5' -55.9 NC_005264.1 + 33846 0.66 0.895714
Target:  5'- ----cCUGCGCGCCGCg---GCAgAGCu -3'
miRNA:   3'- gcucaGACGCGCGGCGguuaCGU-UCG- -5'
24487 5' -55.9 NC_005264.1 + 112035 0.67 0.889042
Target:  5'- ----cCUGCGCGCgCGCCGAUccGaCAAGUu -3'
miRNA:   3'- gcucaGACGCGCG-GCGGUUA--C-GUUCG- -5'
24487 5' -55.9 NC_005264.1 + 101409 0.67 0.889042
Target:  5'- cCGAGga-GCGgGCCGCCGA---AAGCa -3'
miRNA:   3'- -GCUCagaCGCgCGGCGGUUacgUUCG- -5'
24487 5' -55.9 NC_005264.1 + 83505 0.67 0.889042
Target:  5'- aGAG-CaGCGCGCaCGCUacgcacgcaaauGcgGCGAGCg -3'
miRNA:   3'- gCUCaGaCGCGCG-GCGG------------UuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 2608 0.67 0.889042
Target:  5'- gGAGaagGCGCGa-GCCGA-GCAGGCg -3'
miRNA:   3'- gCUCagaCGCGCggCGGUUaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 121635 0.67 0.889042
Target:  5'- gGAGaagGCGCGa-GCCGA-GCAGGCg -3'
miRNA:   3'- gCUCagaCGCGCggCGGUUaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 46419 0.67 0.889042
Target:  5'- gCGAGgCUGCaCGCCGCCc-UGCGcucgacgucGGCc -3'
miRNA:   3'- -GCUCaGACGcGCGGCGGuuACGU---------UCG- -5'
24487 5' -55.9 NC_005264.1 + 61100 0.67 0.889042
Target:  5'- uGGGga-GCGCGCCGCCAAgacGCucuuGAGg -3'
miRNA:   3'- gCUCagaCGCGCGGCGGUUa--CG----UUCg -5'
24487 5' -55.9 NC_005264.1 + 112574 0.67 0.882143
Target:  5'- aCGAGcaacUCgGaauCGCCGCCGcgGCAGGUg -3'
miRNA:   3'- -GCUC----AGaCgc-GCGGCGGUuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 150859 0.67 0.882143
Target:  5'- ---cUCUGcCGUGCCGCgCGcgGCAAGa -3'
miRNA:   3'- gcucAGAC-GCGCGGCG-GUuaCGUUCg -5'
24487 5' -55.9 NC_005264.1 + 24195 0.67 0.882143
Target:  5'- -aAGUCUgGCGCGgUGCCGGUGgCcgAAGCc -3'
miRNA:   3'- gcUCAGA-CGCGCgGCGGUUAC-G--UUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.