miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 5' -55.9 NC_005264.1 + 26121 0.7 0.706487
Target:  5'- gCGGcUCgugGCGCGgCGCCGAgagaaugGCGAGCc -3'
miRNA:   3'- -GCUcAGa--CGCGCgGCGGUUa------CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 26354 0.72 0.58435
Target:  5'- -uAGUCuUGUGCGCCGCg---GCAGGCu -3'
miRNA:   3'- gcUCAG-ACGCGCGGCGguuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 28137 0.79 0.275654
Target:  5'- --cGUCUGCGCuuugauUCGCCAGUGCGGGCg -3'
miRNA:   3'- gcuCAGACGCGc-----GGCGGUUACGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 30852 0.74 0.476112
Target:  5'- --cGUCggcggcgGCGCGCCGCCcg-GUAGGCa -3'
miRNA:   3'- gcuCAGa------CGCGCGGCGGuuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 31165 0.69 0.792906
Target:  5'- gCGAG-CcGaCGUGCCGCCAAcggucuggcgGCGGGCa -3'
miRNA:   3'- -GCUCaGaC-GCGCGGCGGUUa---------CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 31833 0.67 0.882143
Target:  5'- ---cUCUGcCGUGCCGCgCGcgGCAAGa -3'
miRNA:   3'- gcucAGAC-GCGCGGCG-GUuaCGUUCg -5'
24487 5' -55.9 NC_005264.1 + 33535 0.69 0.76508
Target:  5'- aGGGUCgGCGCuGCCGCgAAUaagcGUAAGUu -3'
miRNA:   3'- gCUCAGaCGCG-CGGCGgUUA----CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 33846 0.66 0.895714
Target:  5'- ----cCUGCGCGCCGCg---GCAgAGCu -3'
miRNA:   3'- gcucaGACGCGCGGCGguuaCGU-UCG- -5'
24487 5' -55.9 NC_005264.1 + 35478 0.66 0.895714
Target:  5'- gCGAGagUGC-CGCgGCCGAUcGCGacGGCu -3'
miRNA:   3'- -GCUCagACGcGCGgCGGUUA-CGU--UCG- -5'
24487 5' -55.9 NC_005264.1 + 37565 0.69 0.801904
Target:  5'- ------aGCGCGCCGCCGcgGaGGGCg -3'
miRNA:   3'- gcucagaCGCGCGGCGGUuaCgUUCG- -5'
24487 5' -55.9 NC_005264.1 + 37721 0.8 0.233119
Target:  5'- cCGGGUCUGC-CGCCGCUAcgacGCGAGCc -3'
miRNA:   3'- -GCUCAGACGcGCGGCGGUua--CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 37803 0.74 0.476112
Target:  5'- gGAGaagagGCGCGCCGCCGAcgaguuUGCGAGg -3'
miRNA:   3'- gCUCaga--CGCGCGGCGGUU------ACGUUCg -5'
24487 5' -55.9 NC_005264.1 + 38034 0.69 0.792906
Target:  5'- uGGGUUaGUGCGCCGCuuguCAGUGgaAGGCg -3'
miRNA:   3'- gCUCAGaCGCGCGGCG----GUUACg-UUCG- -5'
24487 5' -55.9 NC_005264.1 + 39201 0.68 0.827941
Target:  5'- uCGAGaacGCGCcuacGCCGCCGcgGCGcuGGCg -3'
miRNA:   3'- -GCUCagaCGCG----CGGCGGUuaCGU--UCG- -5'
24487 5' -55.9 NC_005264.1 + 39211 0.66 0.914341
Target:  5'- aGAGUCUGCG-GCUGCCGGa------ -3'
miRNA:   3'- gCUCAGACGCgCGGCGGUUacguucg -5'
24487 5' -55.9 NC_005264.1 + 39449 0.69 0.793813
Target:  5'- cCGGGgcgguggaaagcaugCUGCGacgcgcgcucaGCCGCCAGggGCAGGCc -3'
miRNA:   3'- -GCUCa--------------GACGCg----------CGGCGGUUa-CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 39540 0.66 0.913754
Target:  5'- ---cUCUGC-CGCCGCCccgcgguucccgcGcgGCAAGCc -3'
miRNA:   3'- gcucAGACGcGCGGCGG-------------UuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 39725 0.69 0.76508
Target:  5'- --cGUCgugccGCGaCGCCGCCcGUGCAacAGCc -3'
miRNA:   3'- gcuCAGa----CGC-GCGGCGGuUACGU--UCG- -5'
24487 5' -55.9 NC_005264.1 + 40733 0.73 0.54409
Target:  5'- aCGGGUCcucgGC-CGCCGCCAGUcGC-GGCg -3'
miRNA:   3'- -GCUCAGa---CGcGCGGCGGUUA-CGuUCG- -5'
24487 5' -55.9 NC_005264.1 + 42553 0.66 0.914341
Target:  5'- gCGcGUCUuCGCGCCggcagccuuGCCGGagGCGAGCc -3'
miRNA:   3'- -GCuCAGAcGCGCGG---------CGGUUa-CGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.