miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 5' -55.9 NC_005264.1 + 1940 0.8 0.23884
Target:  5'- aGAGUCUGUGCGCgGCCGuUGCccccccccccGAGCu -3'
miRNA:   3'- gCUCAGACGCGCGgCGGUuACG----------UUCG- -5'
24487 5' -55.9 NC_005264.1 + 2608 0.67 0.889042
Target:  5'- gGAGaagGCGCGa-GCCGA-GCAGGCg -3'
miRNA:   3'- gCUCagaCGCGCggCGGUUaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 3294 0.69 0.755556
Target:  5'- aGAGUCgugagcucGCGCgggaucGCgCGCCG-UGCAAGCg -3'
miRNA:   3'- gCUCAGa-------CGCG------CG-GCGGUuACGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 3765 0.71 0.683318
Target:  5'- cCGGGgcgCUGCGggcccuuggucgacCGCCGCCGAucUGCGuGGCg -3'
miRNA:   3'- -GCUCa--GACGC--------------GCGGCGGUU--ACGU-UCG- -5'
24487 5' -55.9 NC_005264.1 + 5201 0.66 0.902157
Target:  5'- uCGuGUCU-CGCGCCGCg---GCGAGg -3'
miRNA:   3'- -GCuCAGAcGCGCGGCGguuaCGUUCg -5'
24487 5' -55.9 NC_005264.1 + 6403 0.67 0.860134
Target:  5'- uGGGauaUCgagGCGaucacCGCCGCCAGccGCAGGCa -3'
miRNA:   3'- gCUC---AGa--CGC-----GCGGCGGUUa-CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 6526 0.66 0.902157
Target:  5'- gCGcGUUUGCaGCGCCGCguAcgggagacccUGCGAGUu -3'
miRNA:   3'- -GCuCAGACG-CGCGGCGguU----------ACGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 7980 0.69 0.76508
Target:  5'- aCGaAGUCcGUGCacggGCCGCCAuUGCGGGg -3'
miRNA:   3'- -GC-UCAGaCGCG----CGGCGGUuACGUUCg -5'
24487 5' -55.9 NC_005264.1 + 10525 0.67 0.867683
Target:  5'- gCGGGUCcugUGCgGCGCCGCCcucagGGGCg -3'
miRNA:   3'- -GCUCAG---ACG-CGCGGCGGuuacgUUCG- -5'
24487 5' -55.9 NC_005264.1 + 12207 0.71 0.645621
Target:  5'- aGGGcgaUGCGCGCCGCCuc-GCcagaGAGCa -3'
miRNA:   3'- gCUCag-ACGCGCGGCGGuuaCG----UUCG- -5'
24487 5' -55.9 NC_005264.1 + 12963 0.75 0.430233
Target:  5'- cCGGG-CggcGCGCGCCGCCGAcgacgacGCGAGCc -3'
miRNA:   3'- -GCUCaGa--CGCGCGGCGGUUa------CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 16491 0.66 0.898319
Target:  5'- aCGAGUCacaugcgucauucgGCGCGCaCGCCGAgaguCAGGa -3'
miRNA:   3'- -GCUCAGa-------------CGCGCG-GCGGUUac--GUUCg -5'
24487 5' -55.9 NC_005264.1 + 17340 0.66 0.914341
Target:  5'- gGAcGUCUGCaGUGCCuuCCGcgGCAgcuGGCg -3'
miRNA:   3'- gCU-CAGACG-CGCGGc-GGUuaCGU---UCG- -5'
24487 5' -55.9 NC_005264.1 + 17711 0.68 0.841998
Target:  5'- uCGGGUguuagggaaauuacCUGCGCGCCGCgGcgcaaccuAUGcCAAGUu -3'
miRNA:   3'- -GCUCA--------------GACGCGCGGCGgU--------UAC-GUUCG- -5'
24487 5' -55.9 NC_005264.1 + 19531 0.67 0.860134
Target:  5'- uCGGGaCgGC-CGCCGCCAAcguUGCcgGAGCg -3'
miRNA:   3'- -GCUCaGaCGcGCGGCGGUU---ACG--UUCG- -5'
24487 5' -55.9 NC_005264.1 + 20018 0.68 0.827941
Target:  5'- aGGGUCUaccacgGCGCGCuCGCacccGUGCA-GCg -3'
miRNA:   3'- gCUCAGA------CGCGCG-GCGgu--UACGUuCG- -5'
24487 5' -55.9 NC_005264.1 + 20138 0.66 0.902157
Target:  5'- gCGGGcaggCgaugGCGCGCCGCCg--GCGcccaagaucgcGGCa -3'
miRNA:   3'- -GCUCa---Ga---CGCGCGGCGGuuaCGU-----------UCG- -5'
24487 5' -55.9 NC_005264.1 + 21255 0.78 0.316868
Target:  5'- uCGAGUgUGCGCGCCGCgGAggugGUAAcGCc -3'
miRNA:   3'- -GCUCAgACGCGCGGCGgUUa---CGUU-CG- -5'
24487 5' -55.9 NC_005264.1 + 23933 0.71 0.69544
Target:  5'- gCGGuUCUGguCGCGCCGCCGAUGgGuauguggGGCg -3'
miRNA:   3'- -GCUcAGAC--GCGCGGCGGUUACgU-------UCG- -5'
24487 5' -55.9 NC_005264.1 + 24195 0.67 0.882143
Target:  5'- -aAGUCUgGCGCGgUGCCGGUGgCcgAAGCc -3'
miRNA:   3'- gcUCAGA-CGCGCgGCGGUUAC-G--UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.