miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 5' -55.9 NC_005264.1 + 45866 1.12 0.001824
Target:  5'- uCGAGUCUGCGCGCCGCCAAUGCAAGCg -3'
miRNA:   3'- -GCUCAGACGCGCGGCGGUUACGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 156747 0.8 0.233119
Target:  5'- cCGGGUCUGC-CGCCGCUAcgacGCGAGCc -3'
miRNA:   3'- -GCUCAGACGcGCGGCGGUua--CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 37721 0.8 0.233119
Target:  5'- cCGGGUCUGC-CGCCGCUAcgacGCGAGCc -3'
miRNA:   3'- -GCUCAGACGcGCGGCGGUua--CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 120966 0.8 0.23884
Target:  5'- aGAGUCUGUGCGCgGCCGuUGCccccccccccGAGCu -3'
miRNA:   3'- gCUCAGACGCGCGgCGGUuACG----------UUCG- -5'
24487 5' -55.9 NC_005264.1 + 1940 0.8 0.23884
Target:  5'- aGAGUCUGUGCGCgGCCGuUGCccccccccccGAGCu -3'
miRNA:   3'- gCUCAGACGCGCGgCGGUuACG----------UUCG- -5'
24487 5' -55.9 NC_005264.1 + 28137 0.79 0.275654
Target:  5'- --cGUCUGCGCuuugauUCGCCAGUGCGGGCg -3'
miRNA:   3'- gcuCAGACGCGc-----GGCGGUUACGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 59982 0.78 0.309688
Target:  5'- aCGuGUCUGCaGCGCCGCa---GCAGGCu -3'
miRNA:   3'- -GCuCAGACG-CGCGGCGguuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 21255 0.78 0.316868
Target:  5'- uCGAGUgUGCGCGCCGCgGAggugGUAAcGCc -3'
miRNA:   3'- -GCUCAgACGCGCGGCGgUUa---CGUU-CG- -5'
24487 5' -55.9 NC_005264.1 + 106391 0.77 0.339154
Target:  5'- cCGuGUCUGUaCGCCGCCuacgucgGCAAGCa -3'
miRNA:   3'- -GCuCAGACGcGCGGCGGuua----CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 12963 0.75 0.430233
Target:  5'- cCGGG-CggcGCGCGCCGCCGAcgacgacGCGAGCc -3'
miRNA:   3'- -GCUCaGa--CGCGCGGCGGUUa------CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 95362 0.75 0.448279
Target:  5'- aCGGG-CggcGCGUGCCGCCAAacUGcCAGGCg -3'
miRNA:   3'- -GCUCaGa--CGCGCGGCGGUU--AC-GUUCG- -5'
24487 5' -55.9 NC_005264.1 + 37803 0.74 0.476112
Target:  5'- gGAGaagagGCGCGCCGCCGAcgaguuUGCGAGg -3'
miRNA:   3'- gCUCaga--CGCGCGGCGGUU------ACGUUCg -5'
24487 5' -55.9 NC_005264.1 + 30852 0.74 0.476112
Target:  5'- --cGUCggcggcgGCGCGCCGCCcg-GUAGGCa -3'
miRNA:   3'- gcuCAGa------CGCGCGGCGGuuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 149878 0.74 0.476112
Target:  5'- --cGUCggcggcgGCGCGCCGCCcg-GUAGGCa -3'
miRNA:   3'- gcuCAGa------CGCGCGGCGGuuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 121911 0.74 0.492259
Target:  5'- gCGGGUCUGUucagaagcuagcccGCGCCGCCGA--CAGGUa -3'
miRNA:   3'- -GCUCAGACG--------------CGCGGCGGUUacGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 43391 0.74 0.514497
Target:  5'- uGAGUCUGUGgGCgGCCuggGCA-GCg -3'
miRNA:   3'- gCUCAGACGCgCGgCGGuuaCGUuCG- -5'
24487 5' -55.9 NC_005264.1 + 143738 0.74 0.524293
Target:  5'- --cGUCUcCGCGCCGCCGcgGUGCAguccuGGCu -3'
miRNA:   3'- gcuCAGAcGCGCGGCGGU--UACGU-----UCG- -5'
24487 5' -55.9 NC_005264.1 + 146264 0.74 0.524293
Target:  5'- gGAGUCaUGUGCGCCGCCGccccgGCGccGCc -3'
miRNA:   3'- gCUCAG-ACGCGCGGCGGUua---CGUu-CG- -5'
24487 5' -55.9 NC_005264.1 + 131989 0.73 0.534159
Target:  5'- cCGGG-CgGCGCGCCGCCGccgacgacgAcGCGAGCc -3'
miRNA:   3'- -GCUCaGaCGCGCGGCGGU---------UaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 159759 0.73 0.54409
Target:  5'- aCGGGUCcucgGC-CGCCGCCAGUcGC-GGCg -3'
miRNA:   3'- -GCUCAGa---CGcGCGGCGGUUA-CGuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.