miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 5' -55.9 NC_005264.1 + 159759 0.73 0.54409
Target:  5'- aCGGGUCcucgGC-CGCCGCCAGUcGC-GGCg -3'
miRNA:   3'- -GCUCAGa---CGcGCGGCGGUUA-CGuUCG- -5'
24487 5' -55.9 NC_005264.1 + 136357 0.73 0.54409
Target:  5'- aCGGGcgCUGgGCGCUGCCGGcGCGaauAGCg -3'
miRNA:   3'- -GCUCa-GACgCGCGGCGGUUaCGU---UCG- -5'
24487 5' -55.9 NC_005264.1 + 75406 0.73 0.554081
Target:  5'- --cGUCUGCGCgGCCGCgggCAGUGUAcGGCg -3'
miRNA:   3'- gcuCAGACGCG-CGGCG---GUUACGU-UCG- -5'
24487 5' -55.9 NC_005264.1 + 26354 0.72 0.58435
Target:  5'- -uAGUCuUGUGCGCCGCg---GCAGGCu -3'
miRNA:   3'- gcUCAG-ACGCGCGGCGguuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 88597 0.72 0.604712
Target:  5'- cCGuGUCUGgaGCGCgGCCAgcgcgcuacGUGCGAGUu -3'
miRNA:   3'- -GCuCAGACg-CGCGgCGGU---------UACGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 96646 0.72 0.625156
Target:  5'- gGAGgCgcacCGC-CCGCCGAUGCGGGCg -3'
miRNA:   3'- gCUCaGac--GCGcGGCGGUUACGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 131234 0.71 0.645621
Target:  5'- aGGGcgaUGCGCGCCGCCuc-GCcagaGAGCa -3'
miRNA:   3'- gCUCag-ACGCGCGGCGGuuaCG----UUCG- -5'
24487 5' -55.9 NC_005264.1 + 12207 0.71 0.645621
Target:  5'- aGGGcgaUGCGCGCCGCCuc-GCcagaGAGCa -3'
miRNA:   3'- gCUCag-ACGCGCGGCGGuuaCG----UUCG- -5'
24487 5' -55.9 NC_005264.1 + 107973 0.71 0.676216
Target:  5'- aGuAGUUaGCGUGaCCGUgGAUGCGGGCg -3'
miRNA:   3'- gC-UCAGaCGCGC-GGCGgUUACGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 3765 0.71 0.683318
Target:  5'- cCGGGgcgCUGCGggcccuuggucgacCGCCGCCGAucUGCGuGGCg -3'
miRNA:   3'- -GCUCa--GACGC--------------GCGGCGGUU--ACGU-UCG- -5'
24487 5' -55.9 NC_005264.1 + 122791 0.71 0.683318
Target:  5'- cCGGGgcgCUGCGggcccuuggucgacCGCCGCCGAucUGCGuGGCg -3'
miRNA:   3'- -GCUCa--GACGC--------------GCGGCGGUU--ACGU-UCG- -5'
24487 5' -55.9 NC_005264.1 + 23933 0.71 0.69544
Target:  5'- gCGGuUCUGguCGCGCCGCCGAUGgGuauguggGGCg -3'
miRNA:   3'- -GCUcAGAC--GCGCGGCGGUUACgU-------UCG- -5'
24487 5' -55.9 NC_005264.1 + 43545 0.71 0.696448
Target:  5'- --cGUCUGCaGCuGCCcaGCCAccGCGAGCa -3'
miRNA:   3'- gcuCAGACG-CG-CGG--CGGUuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 95817 0.71 0.696448
Target:  5'- gGGGcCUGCGCaagGCCGCCGcuccGUcCAGGCa -3'
miRNA:   3'- gCUCaGACGCG---CGGCGGU----UAcGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 81406 0.7 0.706487
Target:  5'- gCGGGU--GCGCGCCGCUuGGUGCucGCu -3'
miRNA:   3'- -GCUCAgaCGCGCGGCGG-UUACGuuCG- -5'
24487 5' -55.9 NC_005264.1 + 123669 0.7 0.706487
Target:  5'- aGAGUC-GCGCGCCcaGCCAAUaauucggacgucGguGGCu -3'
miRNA:   3'- gCUCAGaCGCGCGG--CGGUUA------------CguUCG- -5'
24487 5' -55.9 NC_005264.1 + 26121 0.7 0.706487
Target:  5'- gCGGcUCgugGCGCGgCGCCGAgagaaugGCGAGCc -3'
miRNA:   3'- -GCUcAGa--CGCGCgGCGGUUa------CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 116071 0.7 0.716463
Target:  5'- uGAGUUUGUGCGCCGC--GUGCc--- -3'
miRNA:   3'- gCUCAGACGCGCGGCGguUACGuucg -5'
24487 5' -55.9 NC_005264.1 + 69038 0.7 0.726367
Target:  5'- gCGAGUCgaucucuuugGcCGCgGCCGCCGG-GCAGGUc -3'
miRNA:   3'- -GCUCAGa---------C-GCG-CGGCGGUUaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 153276 0.7 0.726367
Target:  5'- gCGAcGUuuuacCUGCuaGCCGCCAccggcUGCGAGCg -3'
miRNA:   3'- -GCU-CA-----GACGcgCGGCGGUu----ACGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.