miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 5' -55.9 NC_005264.1 + 92143 0.66 0.902157
Target:  5'- --cGUCUuCGCGCUGUCGcccGCGGGCg -3'
miRNA:   3'- gcuCAGAcGCGCGGCGGUua-CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 5201 0.66 0.902157
Target:  5'- uCGuGUCU-CGCGCCGCg---GCGAGg -3'
miRNA:   3'- -GCuCAGAcGCGCGGCGguuaCGUUCg -5'
24487 5' -55.9 NC_005264.1 + 52856 0.66 0.908367
Target:  5'- gGAG-CUGCGCGCauacgacgUGCaCAcgcGCGAGCg -3'
miRNA:   3'- gCUCaGACGCGCG--------GCG-GUua-CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 20138 0.66 0.902157
Target:  5'- gCGGGcaggCgaugGCGCGCCGCCg--GCGcccaagaucgcGGCa -3'
miRNA:   3'- -GCUCa---Ga---CGCGCGGCGGuuaCGU-----------UCG- -5'
24487 5' -55.9 NC_005264.1 + 69405 0.66 0.902157
Target:  5'- gCGGGUagGCGCGCCuGCCGccGUcgGAGUa -3'
miRNA:   3'- -GCUCAgaCGCGCGG-CGGUuaCG--UUCG- -5'
24487 5' -55.9 NC_005264.1 + 16491 0.66 0.898319
Target:  5'- aCGAGUCacaugcgucauucgGCGCGCaCGCCGAgaguCAGGa -3'
miRNA:   3'- -GCUCAGa-------------CGCGCG-GCGGUUac--GUUCg -5'
24487 5' -55.9 NC_005264.1 + 35478 0.66 0.895714
Target:  5'- gCGAGagUGC-CGCgGCCGAUcGCGacGGCu -3'
miRNA:   3'- -GCUCagACGcGCGgCGGUUA-CGU--UCG- -5'
24487 5' -55.9 NC_005264.1 + 6526 0.66 0.902157
Target:  5'- gCGcGUUUGCaGCGCCGCguAcgggagacccUGCGAGUu -3'
miRNA:   3'- -GCuCAGACG-CGCGGCGguU----------ACGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 33846 0.66 0.895714
Target:  5'- ----cCUGCGCGCCGCg---GCAgAGCu -3'
miRNA:   3'- gcucaGACGCGCGGCGguuaCGU-UCG- -5'
24487 5' -55.9 NC_005264.1 + 66202 0.66 0.895714
Target:  5'- gCGGG-CgGUGCGCCuCCGcgGCcAGCg -3'
miRNA:   3'- -GCUCaGaCGCGCGGcGGUuaCGuUCG- -5'
24487 5' -55.9 NC_005264.1 + 6403 0.67 0.860134
Target:  5'- uGGGauaUCgagGCGaucacCGCCGCCAGccGCAGGCa -3'
miRNA:   3'- gCUC---AGa--CGC-----GCGGCGGUUa-CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 155928 0.67 0.860134
Target:  5'- uCGAGUCUuuCGCGCaacggcagcaGCCAagGCAacAGCa -3'
miRNA:   3'- -GCUCAGAc-GCGCGg---------CGGUuaCGU--UCG- -5'
24487 5' -55.9 NC_005264.1 + 24195 0.67 0.882143
Target:  5'- -aAGUCUgGCGCGgUGCCGGUGgCcgAAGCc -3'
miRNA:   3'- gcUCAGA-CGCGCgGCGGUUAC-G--UUCG- -5'
24487 5' -55.9 NC_005264.1 + 50527 0.67 0.867683
Target:  5'- uCGAuGUCUcUGCGCUGCCAAgagGCcugucgAAGCu -3'
miRNA:   3'- -GCU-CAGAcGCGCGGCGGUUa--CG------UUCG- -5'
24487 5' -55.9 NC_005264.1 + 112035 0.67 0.889042
Target:  5'- ----cCUGCGCGCgCGCCGAUccGaCAAGUu -3'
miRNA:   3'- gcucaGACGCGCG-GCGGUUA--C-GUUCG- -5'
24487 5' -55.9 NC_005264.1 + 129552 0.67 0.867683
Target:  5'- gCGGGUCcugUGCgGCGCCGCCcucagGGGCg -3'
miRNA:   3'- -GCUCAG---ACG-CGCGGCGGuuacgUUCG- -5'
24487 5' -55.9 NC_005264.1 + 150859 0.67 0.882143
Target:  5'- ---cUCUGcCGUGCCGCgCGcgGCAAGa -3'
miRNA:   3'- gcucAGAC-GCGCGGCG-GUuaCGUUCg -5'
24487 5' -55.9 NC_005264.1 + 46419 0.67 0.889042
Target:  5'- gCGAGgCUGCaCGCCGCCc-UGCGcucgacgucGGCc -3'
miRNA:   3'- -GCUCaGACGcGCGGCGGuuACGU---------UCG- -5'
24487 5' -55.9 NC_005264.1 + 121635 0.67 0.889042
Target:  5'- gGAGaagGCGCGa-GCCGA-GCAGGCg -3'
miRNA:   3'- gCUCagaCGCGCggCGGUUaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 127006 0.67 0.860134
Target:  5'- aCGAagGUCcGUGCacggGCCGCCAuUGCGGGg -3'
miRNA:   3'- -GCU--CAGaCGCG----CGGCGGUuACGUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.