miRNA display CGI


Results 1 - 20 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 5' -55.9 NC_005264.1 + 43414 0.69 0.76508
Target:  5'- nCGAGaUCgccCGCcaGCCGCgAGUGCAAGUa -3'
miRNA:   3'- -GCUC-AGac-GCG--CGGCGgUUACGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 122791 0.71 0.683318
Target:  5'- cCGGGgcgCUGCGggcccuuggucgacCGCCGCCGAucUGCGuGGCg -3'
miRNA:   3'- -GCUCa--GACGC--------------GCGGCGGUU--ACGU-UCG- -5'
24487 5' -55.9 NC_005264.1 + 23933 0.71 0.69544
Target:  5'- gCGGuUCUGguCGCGCCGCCGAUGgGuauguggGGCg -3'
miRNA:   3'- -GCUcAGAC--GCGCGGCGGUUACgU-------UCG- -5'
24487 5' -55.9 NC_005264.1 + 43545 0.71 0.696448
Target:  5'- --cGUCUGCaGCuGCCcaGCCAccGCGAGCa -3'
miRNA:   3'- gcuCAGACG-CG-CGG--CGGUuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 26121 0.7 0.706487
Target:  5'- gCGGcUCgugGCGCGgCGCCGAgagaaugGCGAGCc -3'
miRNA:   3'- -GCUcAGa--CGCGCgGCGGUUa------CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 64675 0.69 0.755556
Target:  5'- gGGGUUUGgGC-CUGCCGGcggGCAGGCc -3'
miRNA:   3'- gCUCAGACgCGcGGCGGUUa--CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 3294 0.69 0.755556
Target:  5'- aGAGUCgugagcucGCGCgggaucGCgCGCCG-UGCAAGCg -3'
miRNA:   3'- gCUCAGa-------CGCG------CG-GCGGUuACGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 57181 0.69 0.76508
Target:  5'- -uGGUCUGCcgccggcaaaGCGCCGCCcGUGCcauuauugcuAGCa -3'
miRNA:   3'- gcUCAGACG----------CGCGGCGGuUACGu---------UCG- -5'
24487 5' -55.9 NC_005264.1 + 33535 0.69 0.76508
Target:  5'- aGGGUCgGCGCuGCCGCgAAUaagcGUAAGUu -3'
miRNA:   3'- gCUCAGaCGCG-CGGCGgUUA----CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 131234 0.71 0.645621
Target:  5'- aGGGcgaUGCGCGCCGCCuc-GCcagaGAGCa -3'
miRNA:   3'- gCUCag-ACGCGCGGCGGuuaCG----UUCG- -5'
24487 5' -55.9 NC_005264.1 + 88597 0.72 0.604712
Target:  5'- cCGuGUCUGgaGCGCgGCCAgcgcgcuacGUGCGAGUu -3'
miRNA:   3'- -GCuCAGACg-CGCGgCGGU---------UACGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 159759 0.73 0.54409
Target:  5'- aCGGGUCcucgGC-CGCCGCCAGUcGC-GGCg -3'
miRNA:   3'- -GCUCAGa---CGcGCGGCGGUUA-CGuUCG- -5'
24487 5' -55.9 NC_005264.1 + 120966 0.8 0.23884
Target:  5'- aGAGUCUGUGCGCgGCCGuUGCccccccccccGAGCu -3'
miRNA:   3'- gCUCAGACGCGCGgCGGUuACG----------UUCG- -5'
24487 5' -55.9 NC_005264.1 + 106391 0.77 0.339154
Target:  5'- cCGuGUCUGUaCGCCGCCuacgucgGCAAGCa -3'
miRNA:   3'- -GCuCAGACGcGCGGCGGuua----CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 95362 0.75 0.448279
Target:  5'- aCGGG-CggcGCGUGCCGCCAAacUGcCAGGCg -3'
miRNA:   3'- -GCUCaGa--CGCGCGGCGGUU--AC-GUUCG- -5'
24487 5' -55.9 NC_005264.1 + 37803 0.74 0.476112
Target:  5'- gGAGaagagGCGCGCCGCCGAcgaguuUGCGAGg -3'
miRNA:   3'- gCUCaga--CGCGCGGCGGUU------ACGUUCg -5'
24487 5' -55.9 NC_005264.1 + 149878 0.74 0.476112
Target:  5'- --cGUCggcggcgGCGCGCCGCCcg-GUAGGCa -3'
miRNA:   3'- gcuCAGa------CGCGCGGCGGuuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 43391 0.74 0.514497
Target:  5'- uGAGUCUGUGgGCgGCCuggGCA-GCg -3'
miRNA:   3'- gCUCAGACGCgCGgCGGuuaCGUuCG- -5'
24487 5' -55.9 NC_005264.1 + 131989 0.73 0.534159
Target:  5'- cCGGG-CgGCGCGCCGCCGccgacgacgAcGCGAGCc -3'
miRNA:   3'- -GCUCaGaCGCGCGGCGGU---------UaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 136357 0.73 0.54409
Target:  5'- aCGGGcgCUGgGCGCUGCCGGcGCGaauAGCg -3'
miRNA:   3'- -GCUCa-GACgCGCGGCGGUUaCGU---UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.