miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 5' -55.9 NC_005264.1 + 77372 0.66 0.925576
Target:  5'- --cGUCUaGCGCGUCGCCc--GUAAGg -3'
miRNA:   3'- gcuCAGA-CGCGCGGCGGuuaCGUUCg -5'
24487 5' -55.9 NC_005264.1 + 10525 0.67 0.867683
Target:  5'- gCGGGUCcugUGCgGCGCCGCCcucagGGGCg -3'
miRNA:   3'- -GCUCAG---ACG-CGCGGCGGuuacgUUCG- -5'
24487 5' -55.9 NC_005264.1 + 75221 0.67 0.860134
Target:  5'- aGGGUUUGCcucugGCGCgGCCAGgucguccgcguuUGCcGGCa -3'
miRNA:   3'- gCUCAGACG-----CGCGgCGGUU------------ACGuUCG- -5'
24487 5' -55.9 NC_005264.1 + 45866 1.12 0.001824
Target:  5'- uCGAGUCUGCGCGCCGCCAAUGCAAGCg -3'
miRNA:   3'- -GCUCAGACGCGCGGCGGUUACGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 43624 0.66 0.908367
Target:  5'- uCGAGgcUCggaaGCGCGCCGgCGAggucGUAGGUg -3'
miRNA:   3'- -GCUC--AGa---CGCGCGGCgGUUa---CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 52856 0.66 0.908367
Target:  5'- gGAG-CUGCGCGCauacgacgUGCaCAcgcGCGAGCg -3'
miRNA:   3'- gCUCaGACGCGCG--------GCG-GUua-CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 92143 0.66 0.902157
Target:  5'- --cGUCUuCGCGCUGUCGcccGCGGGCg -3'
miRNA:   3'- gcuCAGAcGCGCGGCGGUua-CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 69405 0.66 0.902157
Target:  5'- gCGGGUagGCGCGCCuGCCGccGUcgGAGUa -3'
miRNA:   3'- -GCUCAgaCGCGCGG-CGGUuaCG--UUCG- -5'
24487 5' -55.9 NC_005264.1 + 93050 0.66 0.902157
Target:  5'- gCGuG-CUGCuGCGCUGCC-AUGC-GGCc -3'
miRNA:   3'- -GCuCaGACG-CGCGGCGGuUACGuUCG- -5'
24487 5' -55.9 NC_005264.1 + 31833 0.67 0.882143
Target:  5'- ---cUCUGcCGUGCCGCgCGcgGCAAGa -3'
miRNA:   3'- gcucAGAC-GCGCGGCG-GUuaCGUUCg -5'
24487 5' -55.9 NC_005264.1 + 101409 0.67 0.889042
Target:  5'- cCGAGga-GCGgGCCGCCGA---AAGCa -3'
miRNA:   3'- -GCUCagaCGCgCGGCGGUUacgUUCG- -5'
24487 5' -55.9 NC_005264.1 + 5201 0.66 0.902157
Target:  5'- uCGuGUCU-CGCGCCGCg---GCGAGg -3'
miRNA:   3'- -GCuCAGAcGCGCGGCGguuaCGUUCg -5'
24487 5' -55.9 NC_005264.1 + 135375 0.66 0.920078
Target:  5'- aGAGaaaauguccUUUGCuGCGCCGCuCGGcGCAGGUc -3'
miRNA:   3'- gCUC---------AGACG-CGCGGCG-GUUaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 2608 0.67 0.889042
Target:  5'- gGAGaagGCGCGa-GCCGA-GCAGGCg -3'
miRNA:   3'- gCUCagaCGCGCggCGGUUaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 129626 0.66 0.914341
Target:  5'- uCGAGUagacGCcgaGCGCCGCCAGccuUAAGCg -3'
miRNA:   3'- -GCUCAga--CG---CGCGGCGGUUac-GUUCG- -5'
24487 5' -55.9 NC_005264.1 + 20138 0.66 0.902157
Target:  5'- gCGGGcaggCgaugGCGCGCCGCCg--GCGcccaagaucgcGGCa -3'
miRNA:   3'- -GCUCa---Ga---CGCGCGGCGGuuaCGU-----------UCG- -5'
24487 5' -55.9 NC_005264.1 + 83505 0.67 0.889042
Target:  5'- aGAG-CaGCGCGCaCGCUacgcacgcaaauGcgGCGAGCg -3'
miRNA:   3'- gCUCaGaCGCGCG-GCGG------------UuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 92629 0.67 0.860134
Target:  5'- uCGAGUCcuUGC-CGCCuGCCAgcacgaauGUGCGuaaGGCg -3'
miRNA:   3'- -GCUCAG--ACGcGCGG-CGGU--------UACGU---UCG- -5'
24487 5' -55.9 NC_005264.1 + 39540 0.66 0.913754
Target:  5'- ---cUCUGC-CGCCGCCccgcgguucccgcGcgGCAAGCc -3'
miRNA:   3'- gcucAGACGcGCGGCGG-------------UuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 109567 0.66 0.902157
Target:  5'- ----aCUGCgGCGCCGCgGGacaGCAAGCc -3'
miRNA:   3'- gcucaGACG-CGCGGCGgUUa--CGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.