miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 5' -55.9 NC_005264.1 + 160409 0.69 0.76508
Target:  5'- aGAGUgcaggcugCUGUGCGCCcaGCUuuuggGCAAGCa -3'
miRNA:   3'- gCUCA--------GACGCGCGG--CGGuua--CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 159759 0.73 0.54409
Target:  5'- aCGGGUCcucgGC-CGCCGCCAGUcGC-GGCg -3'
miRNA:   3'- -GCUCAGa---CGcGCGGCGGUUA-CGuUCG- -5'
24487 5' -55.9 NC_005264.1 + 158751 0.69 0.76508
Target:  5'- --cGUCgugccGCGaCGCCGCCcGUGCAacAGCc -3'
miRNA:   3'- gcuCAGa----CGC-GCGGCGGuUACGU--UCG- -5'
24487 5' -55.9 NC_005264.1 + 158567 0.66 0.913754
Target:  5'- ---cUCUGC-CGCCGCCccgcgguucccgcGcgGCAAGCc -3'
miRNA:   3'- gcucAGACGcGCGGCGG-------------UuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 158476 0.69 0.793813
Target:  5'- cCGGGgcgguggaaagcaugCUGCGacgcgcgcucaGCCGCCAGggGCAGGCc -3'
miRNA:   3'- -GCUCa--------------GACGCg----------CGGCGGUUa-CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 158228 0.68 0.827941
Target:  5'- uCGAGaacGCGCcuacGCCGCCGcgGCGcuGGCg -3'
miRNA:   3'- -GCUCagaCGCG----CGGCGGUuaCGU--UCG- -5'
24487 5' -55.9 NC_005264.1 + 156747 0.8 0.233119
Target:  5'- cCGGGUCUGC-CGCCGCUAcgacGCGAGCc -3'
miRNA:   3'- -GCUCAGACGcGCGGCGGUua--CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 155928 0.67 0.860134
Target:  5'- uCGAGUCUuuCGCGCaacggcagcaGCCAagGCAacAGCa -3'
miRNA:   3'- -GCUCAGAc-GCGCGg---------CGGUuaCGU--UCG- -5'
24487 5' -55.9 NC_005264.1 + 153276 0.7 0.726367
Target:  5'- gCGAcGUuuuacCUGCuaGCCGCCAccggcUGCGAGCg -3'
miRNA:   3'- -GCU-CA-----GACGcgCGGCGGUu----ACGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 150859 0.67 0.882143
Target:  5'- ---cUCUGcCGUGCCGCgCGcgGCAAGa -3'
miRNA:   3'- gcucAGAC-GCGCGGCG-GUuaCGUUCg -5'
24487 5' -55.9 NC_005264.1 + 149878 0.74 0.476112
Target:  5'- --cGUCggcggcgGCGCGCCGCCcg-GUAGGCa -3'
miRNA:   3'- gcuCAGa------CGCGCGGCGGuuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 146264 0.74 0.524293
Target:  5'- gGAGUCaUGUGCGCCGCCGccccgGCGccGCc -3'
miRNA:   3'- gCUCAG-ACGCGCGGCGGUua---CGUu-CG- -5'
24487 5' -55.9 NC_005264.1 + 145848 0.69 0.792906
Target:  5'- gCGAG-CUGCGCGUUauuggGCCAAUGgcGGCc -3'
miRNA:   3'- -GCUCaGACGCGCGG-----CGGUUACguUCG- -5'
24487 5' -55.9 NC_005264.1 + 143738 0.74 0.524293
Target:  5'- --cGUCUcCGCGCCGCCGcgGUGCAguccuGGCu -3'
miRNA:   3'- gcuCAGAcGCGCGGCGGU--UACGU-----UCG- -5'
24487 5' -55.9 NC_005264.1 + 138299 0.68 0.844423
Target:  5'- aGAGUCUccggGCGCaCCGCag--GCAAGUu -3'
miRNA:   3'- gCUCAGA----CGCGcGGCGguuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 136783 0.67 0.860134
Target:  5'- uGAGUCcuuucgGCGCGUgGCCGGgcgGacaAAGCu -3'
miRNA:   3'- gCUCAGa-----CGCGCGgCGGUUa--Cg--UUCG- -5'
24487 5' -55.9 NC_005264.1 + 136357 0.73 0.54409
Target:  5'- aCGGGcgCUGgGCGCUGCCGGcGCGaauAGCg -3'
miRNA:   3'- -GCUCa-GACgCGCGGCGGUUaCGU---UCG- -5'
24487 5' -55.9 NC_005264.1 + 135375 0.66 0.920078
Target:  5'- aGAGaaaauguccUUUGCuGCGCCGCuCGGcGCAGGUc -3'
miRNA:   3'- gCUC---------AGACG-CGCGGCG-GUUaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 131989 0.73 0.534159
Target:  5'- cCGGG-CgGCGCGCCGCCGccgacgacgAcGCGAGCc -3'
miRNA:   3'- -GCUCaGaCGCGCGGCGGU---------UaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 131653 0.69 0.76508
Target:  5'- -cGGUCUGCGgugccCGCCGCCAGaccGUuGGCg -3'
miRNA:   3'- gcUCAGACGC-----GCGGCGGUUa--CGuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.