Results 61 - 80 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24489 | 3' | -63.5 | NC_005264.1 | + | 19579 | 0.71 | 0.315403 |
Target: 5'- gUUUGCCCCUauuCCCCaugugagcUUGcuacguuccuguucGCCCCUCCCCu -3' miRNA: 3'- -AAACGGGGG---GGGG--------AAU--------------UGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 159227 | 0.71 | 0.310606 |
Target: 5'- --cGCCCgCCCUCgcGGCCCCCCgCg -3' miRNA: 3'- aaaCGGGgGGGGGaaUUGGGGGGgGg -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 40200 | 0.71 | 0.310606 |
Target: 5'- --cGCCCgCCCUCgcGGCCCCCCgCg -3' miRNA: 3'- aaaCGGGgGGGGGaaUUGGGGGGgGg -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 40326 | 0.71 | 0.30385 |
Target: 5'- -cUGCCCCCCgCCgcgUGcggcggcaaGCCCaucgCCCCCg -3' miRNA: 3'- aaACGGGGGGgGGa--AU---------UGGGg---GGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 159353 | 0.71 | 0.30385 |
Target: 5'- -cUGCCCCCCgCCgcgUGcggcggcaaGCCCaucgCCCCCg -3' miRNA: 3'- aaACGGGGGGgGGa--AU---------UGGGg---GGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 16226 | 0.71 | 0.30385 |
Target: 5'- --cGCgCUaCCCUCUgAGCCCCCUCCCa -3' miRNA: 3'- aaaCGgGG-GGGGGAaUUGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 149163 | 0.71 | 0.290678 |
Target: 5'- --gGUCUCCCCCU----CCCCUCCCCu -3' miRNA: 3'- aaaCGGGGGGGGGaauuGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 30136 | 0.71 | 0.290678 |
Target: 5'- --gGUCUCCCCCU----CCCCUCCCCu -3' miRNA: 3'- aaaCGGGGGGGGGaauuGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 57701 | 0.72 | 0.271766 |
Target: 5'- gUUGCCUCCCCCUgcAGCUCCCgaaUCCg -3' miRNA: 3'- aAACGGGGGGGGGaaUUGGGGGg--GGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 159191 | 0.72 | 0.259124 |
Target: 5'- --cGCCCCCagcucaaaccgccUCCCagaAACCCCCaCCCCg -3' miRNA: 3'- aaaCGGGGG-------------GGGGaa-UUGGGGG-GGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 114434 | 0.73 | 0.242461 |
Target: 5'- -aUGCCCCCaCCCgCUccUGGCCgCCgCCCg -3' miRNA: 3'- aaACGGGGG-GGG-GA--AUUGGgGGgGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 42880 | 0.73 | 0.225645 |
Target: 5'- --aGCCCCCCcgacgagCCCUcuccGACCUUCCCCCc -3' miRNA: 3'- aaaCGGGGGG-------GGGAa---UUGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 161906 | 0.73 | 0.225645 |
Target: 5'- --aGCCCCCCcgacgagCCCUcuccGACCUUCCCCCc -3' miRNA: 3'- aaaCGGGGGG-------GGGAa---UUGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 118709 | 0.73 | 0.224595 |
Target: 5'- -cUGCCCUCCCgCUcgUAaucgccgcuaucccGCCCCCuCCCCa -3' miRNA: 3'- aaACGGGGGGGgGA--AU--------------UGGGGG-GGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 109717 | 0.73 | 0.220952 |
Target: 5'- aUUGCCCggCCUCCUcGGCCCCCUCgCCg -3' miRNA: 3'- aAACGGGg-GGGGGAaUUGGGGGGG-GG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 663 | 0.73 | 0.215835 |
Target: 5'- --cGCCCCCCCCU----CCCCgCUCCa -3' miRNA: 3'- aaaCGGGGGGGGGaauuGGGGgGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 119690 | 0.73 | 0.215835 |
Target: 5'- --cGCCCCCCCCU----CCCCgCUCCa -3' miRNA: 3'- aaaCGGGGGGGGGaauuGGGGgGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 157740 | 0.74 | 0.191754 |
Target: 5'- --aGCUCgCCCCCaggcguagagGACCCCUCCCCg -3' miRNA: 3'- aaaCGGGgGGGGGaa--------UUGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 38714 | 0.74 | 0.191754 |
Target: 5'- --aGCUCgCCCCCaggcguagagGACCCCUCCCCg -3' miRNA: 3'- aaaCGGGgGGGGGaa--------UUGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 1957 | 0.74 | 0.1828 |
Target: 5'- gUUGCCCCCCCCCccgAGCUCCCauaugcacuUCCUu -3' miRNA: 3'- aAACGGGGGGGGGaa-UUGGGGG---------GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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