miRNA display CGI


Results 41 - 60 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24489 3' -63.5 NC_005264.1 + 132403 0.68 0.433902
Target:  5'- --gGCCCgcggcUCCCCCgaGACCUCCUCCg -3'
miRNA:   3'- aaaCGGG-----GGGGGGaaUUGGGGGGGGg -5'
24489 3' -63.5 NC_005264.1 + 13376 0.68 0.433902
Target:  5'- --gGCCCgcggcUCCCCCgaGACCUCCUCCg -3'
miRNA:   3'- aaaCGGG-----GGGGGGaaUUGGGGGGGGg -5'
24489 3' -63.5 NC_005264.1 + 42025 0.68 0.433902
Target:  5'- ---uUCCCCCUCCUcc-CCCUCCUCCg -3'
miRNA:   3'- aaacGGGGGGGGGAauuGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 161052 0.68 0.433902
Target:  5'- ---uUCCCCCUCCUcc-CCCUCCUCCg -3'
miRNA:   3'- aaacGGGGGGGGGAauuGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 15927 0.68 0.425393
Target:  5'- -cUGCCCCgauagcCCaCCCaguaGACCCCCUCCUc -3'
miRNA:   3'- aaACGGGG------GG-GGGaa--UUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 46298 0.69 0.416985
Target:  5'- --cGCCgCCUCCg-UAGCCCCCaacgaCCCCa -3'
miRNA:   3'- aaaCGGgGGGGGgaAUUGGGGG-----GGGG- -5'
24489 3' -63.5 NC_005264.1 + 44204 0.69 0.416985
Target:  5'- ---cUUCCCCCCC----CCCCUCCCCa -3'
miRNA:   3'- aaacGGGGGGGGGaauuGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 156842 0.69 0.398036
Target:  5'- --cGCCCgucggggccgacgaCUCCCCUUGGCCCacguCUCCCa -3'
miRNA:   3'- aaaCGGG--------------GGGGGGAAUUGGGg---GGGGG- -5'
24489 3' -63.5 NC_005264.1 + 37816 0.69 0.398036
Target:  5'- --cGCCCgucggggccgacgaCUCCCCUUGGCCCacguCUCCCa -3'
miRNA:   3'- aaaCGGG--------------GGGGGGAAUUGGGg---GGGGG- -5'
24489 3' -63.5 NC_005264.1 + 92783 0.69 0.376509
Target:  5'- --aGCCCCUgguCCCC--GACCCCCCUa- -3'
miRNA:   3'- aaaCGGGGG---GGGGaaUUGGGGGGGgg -5'
24489 3' -63.5 NC_005264.1 + 153173 0.69 0.376509
Target:  5'- --cGCCUCCCCCaaggccucgCUaGACgaucugcacugCCCCCCCCa -3'
miRNA:   3'- aaaCGGGGGGGG---------GAaUUG-----------GGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 34146 0.69 0.376509
Target:  5'- --cGCCUCCCCCaaggccucgCUaGACgaucugcacugCCCCCCCCa -3'
miRNA:   3'- aaaCGGGGGGGG---------GAaUUG-----------GGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 113220 0.7 0.353528
Target:  5'- --gGCCCCCugguaCCCCaccgAGCgCCCCCCg -3'
miRNA:   3'- aaaCGGGGG-----GGGGaa--UUGgGGGGGGg -5'
24489 3' -63.5 NC_005264.1 + 493 0.7 0.338767
Target:  5'- --gGUCCCCCCgCUccuCCCUCCUCCc -3'
miRNA:   3'- aaaCGGGGGGGgGAauuGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 119520 0.7 0.338767
Target:  5'- --gGUCCCCCCgCUccuCCCUCCUCCc -3'
miRNA:   3'- aaaCGGGGGGGgGAauuGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 31081 0.71 0.32446
Target:  5'- --aGCCUCCCUCUUcu-CCUCCUCCCg -3'
miRNA:   3'- aaaCGGGGGGGGGAauuGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 150108 0.71 0.32446
Target:  5'- --aGCCUCCCUCUUcu-CCUCCUCCCg -3'
miRNA:   3'- aaaCGGGGGGGGGAauuGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 39297 0.71 0.319559
Target:  5'- ---cCCCUCCCCCUccgcggacgcccaguCCCCCCUCCg -3'
miRNA:   3'- aaacGGGGGGGGGAauu------------GGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 158324 0.71 0.319559
Target:  5'- ---cCCCUCCCCCUccgcggacgcccaguCCCCCCUCCg -3'
miRNA:   3'- aaacGGGGGGGGGAauu------------GGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 94814 0.71 0.317476
Target:  5'- -gUGCCCCaCCCCuCUcgaagaucuGCCCgaCCCCCg -3'
miRNA:   3'- aaACGGGG-GGGG-GAau-------UGGGg-GGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.