miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24489 3' -63.5 NC_005264.1 + 159953 0.67 0.523914
Target:  5'- --cGCCCuCCCCgCCgc-GCCgCgCCCCg -3'
miRNA:   3'- aaaCGGG-GGGG-GGaauUGGgGgGGGG- -5'
24489 3' -63.5 NC_005264.1 + 96131 0.67 0.523914
Target:  5'- gUUGCUCCCCggcgaCacgUAguacGCCCCCCgCCCg -3'
miRNA:   3'- aAACGGGGGGg----Gga-AU----UGGGGGG-GGG- -5'
24489 3' -63.5 NC_005264.1 + 40926 0.67 0.523914
Target:  5'- --cGCCCuCCCCgCCgc-GCCgCgCCCCg -3'
miRNA:   3'- aaaCGGG-GGGG-GGaauUGGgGgGGGG- -5'
24489 3' -63.5 NC_005264.1 + 128347 0.67 0.514558
Target:  5'- --cGCCCCCCauuCCCgccgAACgUCCUCCUg -3'
miRNA:   3'- aaaCGGGGGG---GGGaa--UUGgGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 8742 0.67 0.505272
Target:  5'- --cGCCCCCCguUCCUaAGCgCCUCUUCCa -3'
miRNA:   3'- aaaCGGGGGG--GGGAaUUG-GGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 30247 0.67 0.496059
Target:  5'- --cGCCCUUCCCCggu-CCCgCCCgCg -3'
miRNA:   3'- aaaCGGGGGGGGGaauuGGGgGGGgG- -5'
24489 3' -63.5 NC_005264.1 + 149274 0.67 0.496059
Target:  5'- --cGCCCUUCCCCggu-CCCgCCCgCg -3'
miRNA:   3'- aaaCGGGGGGGGGaauuGGGgGGGgG- -5'
24489 3' -63.5 NC_005264.1 + 105918 0.67 0.495141
Target:  5'- cUUGCCCCCUCUacgccauCUUcGCUUCCCaCCCc -3'
miRNA:   3'- aAACGGGGGGGG-------GAAuUGGGGGG-GGG- -5'
24489 3' -63.5 NC_005264.1 + 70774 0.67 0.486012
Target:  5'- --cGCCCCUcgugcguacuagaCUCCUUAACUcuguaCUCCCCCg -3'
miRNA:   3'- aaaCGGGGG-------------GGGGAAUUGG-----GGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 146439 0.68 0.476964
Target:  5'- cUUGCCUCCCCgagugccaaugcgCCacgggcauCCCCUCCCCc -3'
miRNA:   3'- aAACGGGGGGG-------------GGaauu----GGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 156944 0.68 0.475165
Target:  5'- --aGCaagaCCCCCCCgcagacgagAggucuagagaacucGCCCUCCCCCu -3'
miRNA:   3'- aaaCGg---GGGGGGGaa-------U--------------UGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 131654 0.68 0.468892
Target:  5'- --aGCCCCCCguCCCacucgcucGCCCUccggCCCCCg -3'
miRNA:   3'- aaaCGGGGGG--GGGaau-----UGGGG----GGGGG- -5'
24489 3' -63.5 NC_005264.1 + 12627 0.68 0.468892
Target:  5'- --aGCCCCCCguCCCacucgcucGCCCUccggCCCCCg -3'
miRNA:   3'- aaaCGGGGGG--GGGaau-----UGGGG----GGGGG- -5'
24489 3' -63.5 NC_005264.1 + 31248 0.68 0.466218
Target:  5'- -gUGUCCCCCCUCagcggUAucuucgcggcgaacGCCCCCCgCUCc -3'
miRNA:   3'- aaACGGGGGGGGGa----AU--------------UGGGGGG-GGG- -5'
24489 3' -63.5 NC_005264.1 + 150275 0.68 0.466218
Target:  5'- -gUGUCCCCCCUCagcggUAucuucgcggcgaacGCCCCCCgCUCc -3'
miRNA:   3'- aaACGGGGGGGGGa----AU--------------UGGGGGG-GGG- -5'
24489 3' -63.5 NC_005264.1 + 3546 0.68 0.460007
Target:  5'- cUUGCCCgCCCCCUcgUGGCgUCUUUCCu -3'
miRNA:   3'- aAACGGGgGGGGGA--AUUGgGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 46396 0.68 0.451211
Target:  5'- --cGCCCCgaucgucgCCCCCgcGGCCagaCgCCCCCa -3'
miRNA:   3'- aaaCGGGG--------GGGGGaaUUGGg--G-GGGGG- -5'
24489 3' -63.5 NC_005264.1 + 119326 0.68 0.443375
Target:  5'- --aGCCCUUCCUCggucucccaccuCCCaCCCCCCa -3'
miRNA:   3'- aaaCGGGGGGGGGaauu--------GGG-GGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 299 0.68 0.443375
Target:  5'- --aGCCCUUCCUCggucucccaccuCCCaCCCCCCa -3'
miRNA:   3'- aaaCGGGGGGGGGaauu--------GGG-GGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 17977 0.68 0.442509
Target:  5'- uUUUGCCaacuuuaUUCCCCUaGGCCCCagggacuuCCCCCg -3'
miRNA:   3'- -AAACGGg------GGGGGGAaUUGGGG--------GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.