Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24489 | 3' | -63.5 | NC_005264.1 | + | 149163 | 0.71 | 0.290678 |
Target: 5'- --gGUCUCCCCCU----CCCCUCCCCu -3' miRNA: 3'- aaaCGGGGGGGGGaauuGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 30136 | 0.71 | 0.290678 |
Target: 5'- --gGUCUCCCCCU----CCCCUCCCCu -3' miRNA: 3'- aaaCGGGGGGGGGaauuGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 159353 | 0.71 | 0.30385 |
Target: 5'- -cUGCCCCCCgCCgcgUGcggcggcaaGCCCaucgCCCCCg -3' miRNA: 3'- aaACGGGGGGgGGa--AU---------UGGGg---GGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 40326 | 0.71 | 0.30385 |
Target: 5'- -cUGCCCCCCgCCgcgUGcggcggcaaGCCCaucgCCCCCg -3' miRNA: 3'- aaACGGGGGGgGGa--AU---------UGGGg---GGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 16226 | 0.71 | 0.30385 |
Target: 5'- --cGCgCUaCCCUCUgAGCCCCCUCCCa -3' miRNA: 3'- aaaCGgGG-GGGGGAaUUGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 40200 | 0.71 | 0.310606 |
Target: 5'- --cGCCCgCCCUCgcGGCCCCCCgCg -3' miRNA: 3'- aaaCGGGgGGGGGaaUUGGGGGGgGg -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 159227 | 0.71 | 0.310606 |
Target: 5'- --cGCCCgCCCUCgcGGCCCCCCgCg -3' miRNA: 3'- aaaCGGGgGGGGGaaUUGGGGGGgGg -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 19579 | 0.71 | 0.315403 |
Target: 5'- gUUUGCCCCUauuCCCCaugugagcUUGcuacguuccuguucGCCCCUCCCCu -3' miRNA: 3'- -AAACGGGGG---GGGG--------AAU--------------UGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 94814 | 0.71 | 0.317476 |
Target: 5'- -gUGCCCCaCCCCuCUcgaagaucuGCCCgaCCCCCg -3' miRNA: 3'- aaACGGGG-GGGG-GAau-------UGGGg-GGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 39297 | 0.71 | 0.319559 |
Target: 5'- ---cCCCUCCCCCUccgcggacgcccaguCCCCCCUCCg -3' miRNA: 3'- aaacGGGGGGGGGAauu------------GGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 158324 | 0.71 | 0.319559 |
Target: 5'- ---cCCCUCCCCCUccgcggacgcccaguCCCCCCUCCg -3' miRNA: 3'- aaacGGGGGGGGGAauu------------GGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 31081 | 0.71 | 0.32446 |
Target: 5'- --aGCCUCCCUCUUcu-CCUCCUCCCg -3' miRNA: 3'- aaaCGGGGGGGGGAauuGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 150108 | 0.71 | 0.32446 |
Target: 5'- --aGCCUCCCUCUUcu-CCUCCUCCCg -3' miRNA: 3'- aaaCGGGGGGGGGAauuGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 119520 | 0.7 | 0.338767 |
Target: 5'- --gGUCCCCCCgCUccuCCCUCCUCCc -3' miRNA: 3'- aaaCGGGGGGGgGAauuGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 493 | 0.7 | 0.338767 |
Target: 5'- --gGUCCCCCCgCUccuCCCUCCUCCc -3' miRNA: 3'- aaaCGGGGGGGgGAauuGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 113220 | 0.7 | 0.353528 |
Target: 5'- --gGCCCCCugguaCCCCaccgAGCgCCCCCCg -3' miRNA: 3'- aaaCGGGGG-----GGGGaa--UUGgGGGGGGg -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 34146 | 0.69 | 0.376509 |
Target: 5'- --cGCCUCCCCCaaggccucgCUaGACgaucugcacugCCCCCCCCa -3' miRNA: 3'- aaaCGGGGGGGG---------GAaUUG-----------GGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 92783 | 0.69 | 0.376509 |
Target: 5'- --aGCCCCUgguCCCC--GACCCCCCUa- -3' miRNA: 3'- aaaCGGGGG---GGGGaaUUGGGGGGGgg -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 153173 | 0.69 | 0.376509 |
Target: 5'- --cGCCUCCCCCaaggccucgCUaGACgaucugcacugCCCCCCCCa -3' miRNA: 3'- aaaCGGGGGGGG---------GAaUUG-----------GGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 37816 | 0.69 | 0.398036 |
Target: 5'- --cGCCCgucggggccgacgaCUCCCCUUGGCCCacguCUCCCa -3' miRNA: 3'- aaaCGGG--------------GGGGGGAAUUGGGg---GGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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