miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24489 3' -63.5 NC_005264.1 + 162018 1.07 0.000782
Target:  5'- uUUUGCCCCCCCCCUUAACCCCCCCCCc -3'
miRNA:   3'- -AAACGGGGGGGGGAAUUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 42991 1.07 0.000782
Target:  5'- uUUUGCCCCCCCCCUUAACCCCCCCCCc -3'
miRNA:   3'- -AAACGGGGGGGGGAAUUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 590 0.82 0.056262
Target:  5'- --cGCCCgCCagCCCCgccgUAGCCCCCCCCCc -3'
miRNA:   3'- aaaCGGG-GG--GGGGa---AUUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 119617 0.82 0.056262
Target:  5'- --cGCCCgCCagCCCCgccgUAGCCCCCCCCCc -3'
miRNA:   3'- aaaCGGG-GG--GGGGa---AUUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 12281 0.78 0.101198
Target:  5'- --cGCCCCCaCCCCaacGGCCCUCCCCg -3'
miRNA:   3'- aaaCGGGGG-GGGGaa-UUGGGGGGGGg -5'
24489 3' -63.5 NC_005264.1 + 131308 0.78 0.101198
Target:  5'- --cGCCCCCaCCCCaacGGCCCUCCCCg -3'
miRNA:   3'- aaaCGGGGG-GGGGaa-UUGGGGGGGGg -5'
24489 3' -63.5 NC_005264.1 + 120983 0.78 0.102996
Target:  5'- gUUGCCCCCCCCCccgAGCUCCCauaugcacuuccuuUCCCa -3'
miRNA:   3'- aAACGGGGGGGGGaa-UUGGGGG--------------GGGG- -5'
24489 3' -63.5 NC_005264.1 + 43724 0.78 0.103776
Target:  5'- --cGCCCUCCCCCagcagAGCCCgCCCCUa -3'
miRNA:   3'- aaaCGGGGGGGGGaa---UUGGGgGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 1957 0.74 0.1828
Target:  5'- gUUGCCCCCCCCCccgAGCUCCCauaugcacuUCCUu -3'
miRNA:   3'- aAACGGGGGGGGGaa-UUGGGGG---------GGGG- -5'
24489 3' -63.5 NC_005264.1 + 157740 0.74 0.191754
Target:  5'- --aGCUCgCCCCCaggcguagagGACCCCUCCCCg -3'
miRNA:   3'- aaaCGGGgGGGGGaa--------UUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 38714 0.74 0.191754
Target:  5'- --aGCUCgCCCCCaggcguagagGACCCCUCCCCg -3'
miRNA:   3'- aaaCGGGgGGGGGaa--------UUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 119690 0.73 0.215835
Target:  5'- --cGCCCCCCCCU----CCCCgCUCCa -3'
miRNA:   3'- aaaCGGGGGGGGGaauuGGGGgGGGG- -5'
24489 3' -63.5 NC_005264.1 + 663 0.73 0.215835
Target:  5'- --cGCCCCCCCCU----CCCCgCUCCa -3'
miRNA:   3'- aaaCGGGGGGGGGaauuGGGGgGGGG- -5'
24489 3' -63.5 NC_005264.1 + 109717 0.73 0.220952
Target:  5'- aUUGCCCggCCUCCUcGGCCCCCUCgCCg -3'
miRNA:   3'- aAACGGGg-GGGGGAaUUGGGGGGG-GG- -5'
24489 3' -63.5 NC_005264.1 + 118709 0.73 0.224595
Target:  5'- -cUGCCCUCCCgCUcgUAaucgccgcuaucccGCCCCCuCCCCa -3'
miRNA:   3'- aaACGGGGGGGgGA--AU--------------UGGGGG-GGGG- -5'
24489 3' -63.5 NC_005264.1 + 161906 0.73 0.225645
Target:  5'- --aGCCCCCCcgacgagCCCUcuccGACCUUCCCCCc -3'
miRNA:   3'- aaaCGGGGGG-------GGGAa---UUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 42880 0.73 0.225645
Target:  5'- --aGCCCCCCcgacgagCCCUcuccGACCUUCCCCCc -3'
miRNA:   3'- aaaCGGGGGG-------GGGAa---UUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 114434 0.73 0.242461
Target:  5'- -aUGCCCCCaCCCgCUccUGGCCgCCgCCCg -3'
miRNA:   3'- aaACGGGGG-GGG-GA--AUUGGgGGgGGG- -5'
24489 3' -63.5 NC_005264.1 + 159191 0.72 0.259124
Target:  5'- --cGCCCCCagcucaaaccgccUCCCagaAACCCCCaCCCCg -3'
miRNA:   3'- aaaCGGGGG-------------GGGGaa-UUGGGGG-GGGG- -5'
24489 3' -63.5 NC_005264.1 + 57701 0.72 0.271766
Target:  5'- gUUGCCUCCCCCUgcAGCUCCCgaaUCCg -3'
miRNA:   3'- aAACGGGGGGGGGaaUUGGGGGg--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.