Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24489 | 3' | -63.5 | NC_005264.1 | + | 119520 | 0.7 | 0.338767 |
Target: 5'- --gGUCCCCCCgCUccuCCCUCCUCCc -3' miRNA: 3'- aaaCGGGGGGGgGAauuGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 149163 | 0.71 | 0.290678 |
Target: 5'- --gGUCUCCCCCU----CCCCUCCCCu -3' miRNA: 3'- aaaCGGGGGGGGGaauuGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 16226 | 0.71 | 0.30385 |
Target: 5'- --cGCgCUaCCCUCUgAGCCCCCUCCCa -3' miRNA: 3'- aaaCGgGG-GGGGGAaUUGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 159353 | 0.71 | 0.30385 |
Target: 5'- -cUGCCCCCCgCCgcgUGcggcggcaaGCCCaucgCCCCCg -3' miRNA: 3'- aaACGGGGGGgGGa--AU---------UGGGg---GGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 159227 | 0.71 | 0.310606 |
Target: 5'- --cGCCCgCCCUCgcGGCCCCCCgCg -3' miRNA: 3'- aaaCGGGgGGGGGaaUUGGGGGGgGg -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 19579 | 0.71 | 0.315403 |
Target: 5'- gUUUGCCCCUauuCCCCaugugagcUUGcuacguuccuguucGCCCCUCCCCu -3' miRNA: 3'- -AAACGGGGG---GGGG--------AAU--------------UGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 94814 | 0.71 | 0.317476 |
Target: 5'- -gUGCCCCaCCCCuCUcgaagaucuGCCCgaCCCCCg -3' miRNA: 3'- aaACGGGG-GGGG-GAau-------UGGGg-GGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 158324 | 0.71 | 0.319559 |
Target: 5'- ---cCCCUCCCCCUccgcggacgcccaguCCCCCCUCCg -3' miRNA: 3'- aaacGGGGGGGGGAauu------------GGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 150108 | 0.71 | 0.32446 |
Target: 5'- --aGCCUCCCUCUUcu-CCUCCUCCCg -3' miRNA: 3'- aaaCGGGGGGGGGAauuGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 57701 | 0.72 | 0.271766 |
Target: 5'- gUUGCCUCCCCCUgcAGCUCCCgaaUCCg -3' miRNA: 3'- aAACGGGGGGGGGaaUUGGGGGg--GGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 114434 | 0.73 | 0.242461 |
Target: 5'- -aUGCCCCCaCCCgCUccUGGCCgCCgCCCg -3' miRNA: 3'- aaACGGGGG-GGG-GA--AUUGGgGGgGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 161906 | 0.73 | 0.225645 |
Target: 5'- --aGCCCCCCcgacgagCCCUcuccGACCUUCCCCCc -3' miRNA: 3'- aaaCGGGGGG-------GGGAa---UUGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 119617 | 0.82 | 0.056262 |
Target: 5'- --cGCCCgCCagCCCCgccgUAGCCCCCCCCCc -3' miRNA: 3'- aaaCGGG-GG--GGGGa---AUUGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 131308 | 0.78 | 0.101198 |
Target: 5'- --cGCCCCCaCCCCaacGGCCCUCCCCg -3' miRNA: 3'- aaaCGGGGG-GGGGaa-UUGGGGGGGGg -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 120983 | 0.78 | 0.102996 |
Target: 5'- gUUGCCCCCCCCCccgAGCUCCCauaugcacuuccuuUCCCa -3' miRNA: 3'- aAACGGGGGGGGGaa-UUGGGGG--------------GGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 43724 | 0.78 | 0.103776 |
Target: 5'- --cGCCCUCCCCCagcagAGCCCgCCCCUa -3' miRNA: 3'- aaaCGGGGGGGGGaa---UUGGGgGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 157740 | 0.74 | 0.191754 |
Target: 5'- --aGCUCgCCCCCaggcguagagGACCCCUCCCCg -3' miRNA: 3'- aaaCGGGgGGGGGaa--------UUGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 119690 | 0.73 | 0.215835 |
Target: 5'- --cGCCCCCCCCU----CCCCgCUCCa -3' miRNA: 3'- aaaCGGGGGGGGGaauuGGGGgGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 109717 | 0.73 | 0.220952 |
Target: 5'- aUUGCCCggCCUCCUcGGCCCCCUCgCCg -3' miRNA: 3'- aAACGGGg-GGGGGAaUUGGGGGGG-GG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 118709 | 0.73 | 0.224595 |
Target: 5'- -cUGCCCUCCCgCUcgUAaucgccgcuaucccGCCCCCuCCCCa -3' miRNA: 3'- aaACGGGGGGGgGA--AU--------------UGGGGG-GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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