miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24489 3' -63.5 NC_005264.1 + 33409 0.66 0.590926
Target:  5'- -cUGCCacgaUCCCgCUcgacGAUCCCUCCCCg -3'
miRNA:   3'- aaACGGg---GGGGgGAa---UUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 46396 0.68 0.451211
Target:  5'- --cGCCCCgaucgucgCCCCCgcGGCCagaCgCCCCCa -3'
miRNA:   3'- aaaCGGGG--------GGGGGaaUUGGg--G-GGGGG- -5'
24489 3' -63.5 NC_005264.1 + 42025 0.68 0.433902
Target:  5'- ---uUCCCCCUCCUcc-CCCUCCUCCg -3'
miRNA:   3'- aaacGGGGGGGGGAauuGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 42991 1.07 0.000782
Target:  5'- uUUUGCCCCCCCCCUUAACCCCCCCCCc -3'
miRNA:   3'- -AAACGGGGGGGGGAAUUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 10142 0.66 0.581226
Target:  5'- --aGCCUCCgCCCCagauucauACCCgCCaCCCg -3'
miRNA:   3'- aaaCGGGGG-GGGGaau-----UGGGgGG-GGG- -5'
24489 3' -63.5 NC_005264.1 + 12921 0.66 0.571558
Target:  5'- --aGUCCUCCCCC--GACgCgUCCCCg -3'
miRNA:   3'- aaaCGGGGGGGGGaaUUGgGgGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 30272 0.66 0.542812
Target:  5'- --cGCUCUCCUCUUccuCCUCCCCCUc -3'
miRNA:   3'- aaaCGGGGGGGGGAauuGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 98162 0.67 0.533333
Target:  5'- --gGCCUgCCCgCCggcaGGCCCaaaCCCCCu -3'
miRNA:   3'- aaaCGGGgGGG-GGaa--UUGGGg--GGGGG- -5'
24489 3' -63.5 NC_005264.1 + 30247 0.67 0.496059
Target:  5'- --cGCCCUUCCCCggu-CCCgCCCgCg -3'
miRNA:   3'- aaaCGGGGGGGGGaauuGGGgGGGgG- -5'
24489 3' -63.5 NC_005264.1 + 31248 0.68 0.466218
Target:  5'- -gUGUCCCCCCUCagcggUAucuucgcggcgaacGCCCCCCgCUCc -3'
miRNA:   3'- aaACGGGGGGGGGa----AU--------------UGGGGGG-GGG- -5'
24489 3' -63.5 NC_005264.1 + 70774 0.67 0.486012
Target:  5'- --cGCCCCUcgugcguacuagaCUCCUUAACUcuguaCUCCCCCg -3'
miRNA:   3'- aaaCGGGGG-------------GGGGAAUUGG-----GGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 128347 0.67 0.514558
Target:  5'- --cGCCCCCCauuCCCgccgAACgUCCUCCUg -3'
miRNA:   3'- aaaCGGGGGG---GGGaa--UUGgGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 108342 0.66 0.590926
Target:  5'- --cGCCgCCUCCCCagAACCCCUuuUg -3'
miRNA:   3'- aaaCGG-GGGGGGGaaUUGGGGGggGg -5'
24489 3' -63.5 NC_005264.1 + 146439 0.68 0.476964
Target:  5'- cUUGCCUCCCCgagugccaaugcgCCacgggcauCCCCUCCCCc -3'
miRNA:   3'- aAACGGGGGGG-------------GGaauu----GGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 28918 0.66 0.590926
Target:  5'- --cGCCCCCaauauuaUCCUccuCCCaCCCCCa -3'
miRNA:   3'- aaaCGGGGGg------GGGAauuGGGgGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 40926 0.67 0.523914
Target:  5'- --cGCCCuCCCCgCCgc-GCCgCgCCCCg -3'
miRNA:   3'- aaaCGGG-GGGG-GGaauUGGgGgGGGG- -5'
24489 3' -63.5 NC_005264.1 + 12627 0.68 0.468892
Target:  5'- --aGCCCCCCguCCCacucgcucGCCCUccggCCCCCg -3'
miRNA:   3'- aaaCGGGGGG--GGGaau-----UGGGG----GGGGG- -5'
24489 3' -63.5 NC_005264.1 + 299 0.68 0.443375
Target:  5'- --aGCCCUUCCUCggucucccaccuCCCaCCCCCCa -3'
miRNA:   3'- aaaCGGGGGGGGGaauu--------GGG-GGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 106329 0.66 0.590926
Target:  5'- --gGCgaCCCCUCCacagAGCCCCagcaaCCCCu -3'
miRNA:   3'- aaaCGg-GGGGGGGaa--UUGGGGg----GGGG- -5'
24489 3' -63.5 NC_005264.1 + 38519 0.66 0.56193
Target:  5'- --cGCCCgCCCCaCgggucAGCCgCCgCCCCg -3'
miRNA:   3'- aaaCGGGgGGGG-Gaa---UUGGgGG-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.