miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24489 3' -63.5 NC_005264.1 + 299 0.68 0.443375
Target:  5'- --aGCCCUUCCUCggucucccaccuCCCaCCCCCCa -3'
miRNA:   3'- aaaCGGGGGGGGGaauu--------GGG-GGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 493 0.7 0.338767
Target:  5'- --gGUCCCCCCgCUccuCCCUCCUCCc -3'
miRNA:   3'- aaaCGGGGGGGgGAauuGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 590 0.82 0.056262
Target:  5'- --cGCCCgCCagCCCCgccgUAGCCCCCCCCCc -3'
miRNA:   3'- aaaCGGG-GG--GGGGa---AUUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 663 0.73 0.215835
Target:  5'- --cGCCCCCCCCU----CCCCgCUCCa -3'
miRNA:   3'- aaaCGGGGGGGGGaauuGGGGgGGGG- -5'
24489 3' -63.5 NC_005264.1 + 1957 0.74 0.1828
Target:  5'- gUUGCCCCCCCCCccgAGCUCCCauaugcacuUCCUu -3'
miRNA:   3'- aAACGGGGGGGGGaa-UUGGGGG---------GGGG- -5'
24489 3' -63.5 NC_005264.1 + 3546 0.68 0.460007
Target:  5'- cUUGCCCgCCCCCUcgUGGCgUCUUUCCu -3'
miRNA:   3'- aAACGGGgGGGGGA--AUUGgGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 8742 0.67 0.505272
Target:  5'- --cGCCCCCCguUCCUaAGCgCCUCUUCCa -3'
miRNA:   3'- aaaCGGGGGG--GGGAaUUG-GGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 10142 0.66 0.581226
Target:  5'- --aGCCUCCgCCCCagauucauACCCgCCaCCCg -3'
miRNA:   3'- aaaCGGGGG-GGGGaau-----UGGGgGG-GGG- -5'
24489 3' -63.5 NC_005264.1 + 12281 0.78 0.101198
Target:  5'- --cGCCCCCaCCCCaacGGCCCUCCCCg -3'
miRNA:   3'- aaaCGGGGG-GGGGaa-UUGGGGGGGGg -5'
24489 3' -63.5 NC_005264.1 + 12627 0.68 0.468892
Target:  5'- --aGCCCCCCguCCCacucgcucGCCCUccggCCCCCg -3'
miRNA:   3'- aaaCGGGGGG--GGGaau-----UGGGG----GGGGG- -5'
24489 3' -63.5 NC_005264.1 + 12921 0.66 0.571558
Target:  5'- --aGUCCUCCCCC--GACgCgUCCCCg -3'
miRNA:   3'- aaaCGGGGGGGGGaaUUGgGgGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 13376 0.68 0.433902
Target:  5'- --gGCCCgcggcUCCCCCgaGACCUCCUCCg -3'
miRNA:   3'- aaaCGGG-----GGGGGGaaUUGGGGGGGGg -5'
24489 3' -63.5 NC_005264.1 + 15927 0.68 0.425393
Target:  5'- -cUGCCCCgauagcCCaCCCaguaGACCCCCUCCUc -3'
miRNA:   3'- aaACGGGG------GG-GGGaa--UUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 16226 0.71 0.30385
Target:  5'- --cGCgCUaCCCUCUgAGCCCCCUCCCa -3'
miRNA:   3'- aaaCGgGG-GGGGGAaUUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 17977 0.68 0.442509
Target:  5'- uUUUGCCaacuuuaUUCCCCUaGGCCCCagggacuuCCCCCg -3'
miRNA:   3'- -AAACGGg------GGGGGGAaUUGGGG--------GGGGG- -5'
24489 3' -63.5 NC_005264.1 + 19579 0.71 0.315403
Target:  5'- gUUUGCCCCUauuCCCCaugugagcUUGcuacguuccuguucGCCCCUCCCCu -3'
miRNA:   3'- -AAACGGGGG---GGGG--------AAU--------------UGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 28918 0.66 0.590926
Target:  5'- --cGCCCCCaauauuaUCCUccuCCCaCCCCCa -3'
miRNA:   3'- aaaCGGGGGg------GGGAauuGGGgGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 30136 0.71 0.290678
Target:  5'- --gGUCUCCCCCU----CCCCUCCCCu -3'
miRNA:   3'- aaaCGGGGGGGGGaauuGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 30247 0.67 0.496059
Target:  5'- --cGCCCUUCCCCggu-CCCgCCCgCg -3'
miRNA:   3'- aaaCGGGGGGGGGaauuGGGgGGGgG- -5'
24489 3' -63.5 NC_005264.1 + 30272 0.66 0.542812
Target:  5'- --cGCUCUCCUCUUccuCCUCCCCCUc -3'
miRNA:   3'- aaaCGGGGGGGGGAauuGGGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.