miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24489 3' -63.5 NC_005264.1 + 162018 1.07 0.000782
Target:  5'- uUUUGCCCCCCCCCUUAACCCCCCCCCc -3'
miRNA:   3'- -AAACGGGGGGGGGAAUUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 161906 0.73 0.225645
Target:  5'- --aGCCCCCCcgacgagCCCUcuccGACCUUCCCCCc -3'
miRNA:   3'- aaaCGGGGGG-------GGGAa---UUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 161052 0.68 0.433902
Target:  5'- ---uUCCCCCUCCUcc-CCCUCCUCCg -3'
miRNA:   3'- aaacGGGGGGGGGAauuGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 159953 0.67 0.523914
Target:  5'- --cGCCCuCCCCgCCgc-GCCgCgCCCCg -3'
miRNA:   3'- aaaCGGG-GGGG-GGaauUGGgGgGGGG- -5'
24489 3' -63.5 NC_005264.1 + 159353 0.71 0.30385
Target:  5'- -cUGCCCCCCgCCgcgUGcggcggcaaGCCCaucgCCCCCg -3'
miRNA:   3'- aaACGGGGGGgGGa--AU---------UGGGg---GGGGG- -5'
24489 3' -63.5 NC_005264.1 + 159227 0.71 0.310606
Target:  5'- --cGCCCgCCCUCgcGGCCCCCCgCg -3'
miRNA:   3'- aaaCGGGgGGGGGaaUUGGGGGGgGg -5'
24489 3' -63.5 NC_005264.1 + 159191 0.72 0.259124
Target:  5'- --cGCCCCCagcucaaaccgccUCCCagaAACCCCCaCCCCg -3'
miRNA:   3'- aaaCGGGGG-------------GGGGaa-UUGGGGG-GGGG- -5'
24489 3' -63.5 NC_005264.1 + 158324 0.71 0.319559
Target:  5'- ---cCCCUCCCCCUccgcggacgcccaguCCCCCCUCCg -3'
miRNA:   3'- aaacGGGGGGGGGAauu------------GGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 157740 0.74 0.191754
Target:  5'- --aGCUCgCCCCCaggcguagagGACCCCUCCCCg -3'
miRNA:   3'- aaaCGGGgGGGGGaa--------UUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 157546 0.66 0.56193
Target:  5'- --cGCCCgCCCCaCgggucAGCCgCCgCCCCg -3'
miRNA:   3'- aaaCGGGgGGGG-Gaa---UUGGgGG-GGGG- -5'
24489 3' -63.5 NC_005264.1 + 156944 0.68 0.475165
Target:  5'- --aGCaagaCCCCCCCgcagacgagAggucuagagaacucGCCCUCCCCCu -3'
miRNA:   3'- aaaCGg---GGGGGGGaa-------U--------------UGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 156842 0.69 0.398036
Target:  5'- --cGCCCgucggggccgacgaCUCCCCUUGGCCCacguCUCCCa -3'
miRNA:   3'- aaaCGGG--------------GGGGGGAAUUGGGg---GGGGG- -5'
24489 3' -63.5 NC_005264.1 + 153173 0.69 0.376509
Target:  5'- --cGCCUCCCCCaaggccucgCUaGACgaucugcacugCCCCCCCCa -3'
miRNA:   3'- aaaCGGGGGGGG---------GAaUUG-----------GGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 152436 0.66 0.590926
Target:  5'- -cUGCCacgaUCCCgCUcgacGAUCCCUCCCCg -3'
miRNA:   3'- aaACGGg---GGGGgGAa---UUGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 150275 0.68 0.466218
Target:  5'- -gUGUCCCCCCUCagcggUAucuucgcggcgaacGCCCCCCgCUCc -3'
miRNA:   3'- aaACGGGGGGGGGa----AU--------------UGGGGGG-GGG- -5'
24489 3' -63.5 NC_005264.1 + 150108 0.71 0.32446
Target:  5'- --aGCCUCCCUCUUcu-CCUCCUCCCg -3'
miRNA:   3'- aaaCGGGGGGGGGAauuGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 149299 0.66 0.542812
Target:  5'- --cGCUCUCCUCUUccuCCUCCCCCUc -3'
miRNA:   3'- aaaCGGGGGGGGGAauuGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 149274 0.67 0.496059
Target:  5'- --cGCCCUUCCCCggu-CCCgCCCgCg -3'
miRNA:   3'- aaaCGGGGGGGGGaauuGGGgGGGgG- -5'
24489 3' -63.5 NC_005264.1 + 149163 0.71 0.290678
Target:  5'- --gGUCUCCCCCU----CCCCUCCCCu -3'
miRNA:   3'- aaaCGGGGGGGGGaauuGGGGGGGGG- -5'
24489 3' -63.5 NC_005264.1 + 146439 0.68 0.476964
Target:  5'- cUUGCCUCCCCgagugccaaugcgCCacgggcauCCCCUCCCCc -3'
miRNA:   3'- aAACGGGGGGG-------------GGaauu----GGGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.