Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24489 | 3' | -63.5 | NC_005264.1 | + | 31081 | 0.71 | 0.32446 |
Target: 5'- --aGCCUCCCUCUUcu-CCUCCUCCCg -3' miRNA: 3'- aaaCGGGGGGGGGAauuGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 31248 | 0.68 | 0.466218 |
Target: 5'- -gUGUCCCCCCUCagcggUAucuucgcggcgaacGCCCCCCgCUCc -3' miRNA: 3'- aaACGGGGGGGGGa----AU--------------UGGGGGG-GGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 33409 | 0.66 | 0.590926 |
Target: 5'- -cUGCCacgaUCCCgCUcgacGAUCCCUCCCCg -3' miRNA: 3'- aaACGGg---GGGGgGAa---UUGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 34146 | 0.69 | 0.376509 |
Target: 5'- --cGCCUCCCCCaaggccucgCUaGACgaucugcacugCCCCCCCCa -3' miRNA: 3'- aaaCGGGGGGGG---------GAaUUG-----------GGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 37816 | 0.69 | 0.398036 |
Target: 5'- --cGCCCgucggggccgacgaCUCCCCUUGGCCCacguCUCCCa -3' miRNA: 3'- aaaCGGG--------------GGGGGGAAUUGGGg---GGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 38519 | 0.66 | 0.56193 |
Target: 5'- --cGCCCgCCCCaCgggucAGCCgCCgCCCCg -3' miRNA: 3'- aaaCGGGgGGGG-Gaa---UUGGgGG-GGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 38714 | 0.74 | 0.191754 |
Target: 5'- --aGCUCgCCCCCaggcguagagGACCCCUCCCCg -3' miRNA: 3'- aaaCGGGgGGGGGaa--------UUGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 39297 | 0.71 | 0.319559 |
Target: 5'- ---cCCCUCCCCCUccgcggacgcccaguCCCCCCUCCg -3' miRNA: 3'- aaacGGGGGGGGGAauu------------GGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 40200 | 0.71 | 0.310606 |
Target: 5'- --cGCCCgCCCUCgcGGCCCCCCgCg -3' miRNA: 3'- aaaCGGGgGGGGGaaUUGGGGGGgGg -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 40326 | 0.71 | 0.30385 |
Target: 5'- -cUGCCCCCCgCCgcgUGcggcggcaaGCCCaucgCCCCCg -3' miRNA: 3'- aaACGGGGGGgGGa--AU---------UGGGg---GGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 40926 | 0.67 | 0.523914 |
Target: 5'- --cGCCCuCCCCgCCgc-GCCgCgCCCCg -3' miRNA: 3'- aaaCGGG-GGGG-GGaauUGGgGgGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 42025 | 0.68 | 0.433902 |
Target: 5'- ---uUCCCCCUCCUcc-CCCUCCUCCg -3' miRNA: 3'- aaacGGGGGGGGGAauuGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 42797 | 0.66 | 0.585102 |
Target: 5'- ---uCCCCCCCgCUaGACCCCCUgagcuugucuauugcUCCg -3' miRNA: 3'- aaacGGGGGGGgGAaUUGGGGGG---------------GGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 42880 | 0.73 | 0.225645 |
Target: 5'- --aGCCCCCCcgacgagCCCUcuccGACCUUCCCCCc -3' miRNA: 3'- aaaCGGGGGG-------GGGAa---UUGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 42991 | 1.07 | 0.000782 |
Target: 5'- uUUUGCCCCCCCCCUUAACCCCCCCCCc -3' miRNA: 3'- -AAACGGGGGGGGGAAUUGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 43724 | 0.78 | 0.103776 |
Target: 5'- --cGCCCUCCCCCagcagAGCCCgCCCCUa -3' miRNA: 3'- aaaCGGGGGGGGGaa---UUGGGgGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 44204 | 0.69 | 0.416985 |
Target: 5'- ---cUUCCCCCCC----CCCCUCCCCa -3' miRNA: 3'- aaacGGGGGGGGGaauuGGGGGGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 46298 | 0.69 | 0.416985 |
Target: 5'- --cGCCgCCUCCg-UAGCCCCCaacgaCCCCa -3' miRNA: 3'- aaaCGGgGGGGGgaAUUGGGGG-----GGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 46396 | 0.68 | 0.451211 |
Target: 5'- --cGCCCCgaucgucgCCCCCgcGGCCagaCgCCCCCa -3' miRNA: 3'- aaaCGGGG--------GGGGGaaUUGGg--G-GGGGG- -5' |
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24489 | 3' | -63.5 | NC_005264.1 | + | 57701 | 0.72 | 0.271766 |
Target: 5'- gUUGCCUCCCCCUgcAGCUCCCgaaUCCg -3' miRNA: 3'- aAACGGGGGGGGGaaUUGGGGGg--GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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