Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24489 | 5' | -52.8 | NC_005264.1 | + | 85906 | 0.7 | 0.870462 |
Target: 5'- gCGGGGuggcGAcGGAGAauaGAAGGGGGUc -3' miRNA: 3'- -GCCCCuuu-CUcUCUCU---UUUCCCCCAu -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 43863 | 0.7 | 0.862808 |
Target: 5'- cCGcGGGGAAGAGAcGGAAcgagcgcggcaAAGGGGGc- -3' miRNA: 3'- -GC-CCCUUUCUCUcUCUU-----------UUCCCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 4510 | 0.7 | 0.862031 |
Target: 5'- gGGGGAcuGGGcguccgcGGAGGGGGAGGGGuGGUc -3' miRNA: 3'- gCCCCU--UUC-------UCUCUCUUUUCCC-CCAu -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 123537 | 0.7 | 0.862031 |
Target: 5'- gGGGGAcuGGGcguccgcGGAGGGGGAGGGGuGGUc -3' miRNA: 3'- gCCCCU--UUC-------UCUCUCUUUUCCC-CCAu -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 12727 | 0.71 | 0.838566 |
Target: 5'- gCGGcccGGGAGGAG-GAGAAGAGGGaGGc- -3' miRNA: 3'- -GCC---CCUUUCUCuCUCUUUUCCC-CCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 43211 | 0.71 | 0.821409 |
Target: 5'- gCGGGGggGGGGGGGGcuAcGGcGGGg- -3' miRNA: 3'- -GCCCCuuUCUCUCUCuuUuCC-CCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 43149 | 0.71 | 0.80353 |
Target: 5'- aCGGGu--GGAGcGGGGAGGGGGGGg- -3' miRNA: 3'- -GCCCcuuUCUCuCUCUUUUCCCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 162176 | 0.71 | 0.80353 |
Target: 5'- aCGGGu--GGAGcGGGGAGGGGGGGg- -3' miRNA: 3'- -GCCCcuuUCUCuCUCUUUUCCCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 162238 | 0.71 | 0.821409 |
Target: 5'- gCGGGGggGGGGGGGGcuAcGGcGGGg- -3' miRNA: 3'- -GCCCCuuUCUCUCUCuuUuCC-CCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 131753 | 0.71 | 0.838566 |
Target: 5'- gCGGcccGGGAGGAG-GAGAAGAGGGaGGc- -3' miRNA: 3'- -GCC---CCUUUCUCuCUCUUUUCCC-CCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 144470 | 0.71 | 0.830082 |
Target: 5'- gCGGGGAGAGAccGAGAcagcuauGGGGGa- -3' miRNA: 3'- -GCCCCUUUCUcuCUCUuuu----CCCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 119843 | 0.72 | 0.765896 |
Target: 5'- cCGGGG--GGGGGGuuAAGGGGGGGg- -3' miRNA: 3'- -GCCCCuuUCUCUCucUUUUCCCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 817 | 0.72 | 0.765896 |
Target: 5'- cCGGGG--GGGGGGuuAAGGGGGGGg- -3' miRNA: 3'- -GCCCCuuUCUCUCucUUUUCCCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 13524 | 0.73 | 0.726269 |
Target: 5'- aGGaGGAGAaAGAG-GAAGAGGGGGa- -3' miRNA: 3'- gCC-CCUUUcUCUCuCUUUUCCCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 132551 | 0.73 | 0.726269 |
Target: 5'- aGGaGGAGAaAGAG-GAAGAGGGGGa- -3' miRNA: 3'- gCC-CCUUUcUCUCuCUUUUCCCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 1779 | 0.76 | 0.560151 |
Target: 5'- cCGGaaagacacGGAGGAGGGGGAGGAGGGGGa- -3' miRNA: 3'- -GCCc-------CUUUCUCUCUCUUUUCCCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 119951 | 0.76 | 0.58083 |
Target: 5'- gGGGGAAGGucGGAGAGGGcucgucGGGGGGGc- -3' miRNA: 3'- gCCCCUUUC--UCUCUCUU------UUCCCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 120805 | 0.76 | 0.560151 |
Target: 5'- cCGGaaagacacGGAGGAGGGGGAGGAGGGGGa- -3' miRNA: 3'- -GCCc-------CUUUCUCUCUCUUUUCCCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 925 | 0.76 | 0.58083 |
Target: 5'- gGGGGAAGGucGGAGAGGGcucgucGGGGGGGc- -3' miRNA: 3'- gCCCCUUUC--UCUCUCUU------UUCCCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 118628 | 0.78 | 0.442061 |
Target: 5'- aGGGGAAcAGcucuGGGGAGggGGGGGGGg- -3' miRNA: 3'- gCCCCUU-UC----UCUCUCuuUUCCCCCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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