Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24489 | 5' | -52.8 | NC_005264.1 | + | 12727 | 0.71 | 0.838566 |
Target: 5'- gCGGcccGGGAGGAG-GAGAAGAGGGaGGc- -3' miRNA: 3'- -GCC---CCUUUCUCuCUCUUUUCCC-CCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 131753 | 0.71 | 0.838566 |
Target: 5'- gCGGcccGGGAGGAG-GAGAAGAGGGaGGc- -3' miRNA: 3'- -GCC---CCUUUCUCuCUCUUUUCCC-CCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 4510 | 0.7 | 0.862031 |
Target: 5'- gGGGGAcuGGGcguccgcGGAGGGGGAGGGGuGGUc -3' miRNA: 3'- gCCCCU--UUC-------UCUCUCUUUUCCC-CCAu -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 123537 | 0.7 | 0.862031 |
Target: 5'- gGGGGAcuGGGcguccgcGGAGGGGGAGGGGuGGUc -3' miRNA: 3'- gCCCCU--UUC-------UCUCUCUUUUCCC-CCAu -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 43863 | 0.7 | 0.862808 |
Target: 5'- cCGcGGGGAAGAGAcGGAAcgagcgcggcaAAGGGGGc- -3' miRNA: 3'- -GC-CCCUUUCUCUcUCUU-----------UUCCCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 85906 | 0.7 | 0.870462 |
Target: 5'- gCGGGGuggcGAcGGAGAauaGAAGGGGGUc -3' miRNA: 3'- -GCCCCuuu-CUcUCUCU---UUUCCCCCAu -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 162533 | 0.68 | 0.923229 |
Target: 5'- gGGGGGugggagguGGGAGAccGAGGAAGGGcucGGGUGc -3' miRNA: 3'- gCCCCU--------UUCUCU--CUCUUUUCC---CCCAU- -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 43506 | 0.68 | 0.923229 |
Target: 5'- gGGGGGugggagguGGGAGAccGAGGAAGGGcucGGGUGc -3' miRNA: 3'- gCCCCU--------UUCUCU--CUCUUUUCC---CCCAU- -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 133917 | 0.67 | 0.948175 |
Target: 5'- gGGGGugGGAG-GAGGAuaauauuGGGGGcGUGa -3' miRNA: 3'- gCCCCuuUCUCuCUCUUu------UCCCC-CAU- -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 92541 | 0.67 | 0.948175 |
Target: 5'- gCGGGGAacAAGAuGGAGu---GGGGGa- -3' miRNA: 3'- -GCCCCU--UUCUcUCUCuuuuCCCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 13049 | 0.67 | 0.952424 |
Target: 5'- aGGGcGAcgAGGGGAGAGAAuuuucGGGcGGGGa- -3' miRNA: 3'- gCCC-CU--UUCUCUCUCUU-----UUC-CCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 132076 | 0.67 | 0.952424 |
Target: 5'- aGGGcGAcgAGGGGAGAGAAuuuucGGGcGGGGa- -3' miRNA: 3'- gCCC-CU--UUCUCUCUCUU-----UUC-CCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 23985 | 0.67 | 0.952424 |
Target: 5'- aGuGGGAAGGGGAGguGGAuGAGGcGGGc- -3' miRNA: 3'- gC-CCCUUUCUCUC--UCUuUUCC-CCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 1414 | 0.67 | 0.967058 |
Target: 5'- gGGGGAAauaagcGGGGAuGAGGAAAGGGc--- -3' miRNA: 3'- gCCCCUU------UCUCU-CUCUUUUCCCccau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 31174 | 0.67 | 0.967058 |
Target: 5'- aCGGGGGccGGAGGGcgagcgaguGGGAcGGGGGGc- -3' miRNA: 3'- -GCCCCUu-UCUCUC---------UCUUuUCCCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 120441 | 0.67 | 0.967058 |
Target: 5'- gGGGGAAauaagcGGGGAuGAGGAAAGGGc--- -3' miRNA: 3'- gCCCCUU------UCUCU-CUCUUUUCCCccau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 143587 | 0.67 | 0.967058 |
Target: 5'- cCGGGGcccGGAGGGAacGAGAAuGGcgcGGGGUAc -3' miRNA: 3'- -GCCCC---UUUCUCU--CUCUUuUC---CCCCAU- -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 150201 | 0.67 | 0.967058 |
Target: 5'- aCGGGGGccGGAGGGcgagcgaguGGGAcGGGGGGc- -3' miRNA: 3'- -GCCCCUu-UCUCUC---------UCUUuUCCCCCau -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 19274 | 0.66 | 0.970152 |
Target: 5'- cCGGGGAcGGcAGAGuc-GGGGGaGGGUAg -3' miRNA: 3'- -GCCCCUuUC-UCUCucuUUUCC-CCCAU- -5' |
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24489 | 5' | -52.8 | NC_005264.1 | + | 119129 | 0.66 | 0.973033 |
Target: 5'- uGGGGGAGG-GcGAGGAcgcauGGGGGa- -3' miRNA: 3'- gCCCCUUUCuCuCUCUUuu---CCCCCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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