Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24500 | 5' | -51.2 | NC_005264.1 | + | 154432 | 1.08 | 0.00975 |
Target: 5'- cAUCAACCUCGACAACAACAGCUCCGGc -3' miRNA: 3'- -UAGUUGGAGCUGUUGUUGUCGAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 35405 | 1.08 | 0.00975 |
Target: 5'- cAUCAACCUCGACAACAACAGCUCCGGc -3' miRNA: 3'- -UAGUUGGAGCUGUUGUUGUCGAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 53856 | 0.88 | 0.170958 |
Target: 5'- uGUCAAUCUCGuACAGCAACAGCUCCa- -3' miRNA: 3'- -UAGUUGGAGC-UGUUGUUGUCGAGGcc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 72910 | 0.79 | 0.513693 |
Target: 5'- uUCGGCCUCGACAGCGucgaAGCcugCCGGu -3' miRNA: 3'- uAGUUGGAGCUGUUGUug--UCGa--GGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 6004 | 0.75 | 0.731775 |
Target: 5'- cGUCGGCCcCGACgGGCGGggaGGCUCCGGg -3' miRNA: 3'- -UAGUUGGaGCUG-UUGUUg--UCGAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 125031 | 0.75 | 0.731775 |
Target: 5'- cGUCGGCCcCGACgGGCGGggaGGCUCCGGg -3' miRNA: 3'- -UAGUUGGaGCUG-UUGUUg--UCGAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 76026 | 0.74 | 0.780992 |
Target: 5'- aGUCGGCC--GACGACAGCGGCagCGGa -3' miRNA: 3'- -UAGUUGGagCUGUUGUUGUCGagGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 30606 | 0.73 | 0.808904 |
Target: 5'- -gCAGCC-CGGCGACGGCGGCggcgaCGGa -3' miRNA: 3'- uaGUUGGaGCUGUUGUUGUCGag---GCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 149633 | 0.73 | 0.808904 |
Target: 5'- -gCAGCC-CGGCGACGGCGGCggcgaCGGa -3' miRNA: 3'- uaGUUGGaGCUGUUGUUGUCGag---GCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 126018 | 0.72 | 0.85191 |
Target: 5'- gGUCuccuCCUCGGCGuggcccGCGGCGGCUCCu- -3' miRNA: 3'- -UAGuu--GGAGCUGU------UGUUGUCGAGGcc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 6991 | 0.72 | 0.85191 |
Target: 5'- gGUCuccuCCUCGGCGuggcccGCGGCGGCUCCu- -3' miRNA: 3'- -UAGuu--GGAGCUGU------UGUUGUCGAGGcc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 64902 | 0.72 | 0.875244 |
Target: 5'- --uGACCUCGAC-GCGA-AGCUCUGGa -3' miRNA: 3'- uagUUGGAGCUGuUGUUgUCGAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 106925 | 0.72 | 0.882568 |
Target: 5'- gGUCAcuuuuuCCUCGACAGCuGCGGCggCCGc -3' miRNA: 3'- -UAGUu-----GGAGCUGUUGuUGUCGa-GGCc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 128898 | 0.71 | 0.889657 |
Target: 5'- cUCGuCCUCGACGACGGCgGGCUCa-- -3' miRNA: 3'- uAGUuGGAGCUGUUGUUG-UCGAGgcc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 44561 | 0.71 | 0.892426 |
Target: 5'- cGUCAaacGCCgugcugggUGACGACGagguguucgaguucgGCAGCUCCGGc -3' miRNA: 3'- -UAGU---UGGa-------GCUGUUGU---------------UGUCGAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 2635 | 0.71 | 0.90311 |
Target: 5'- uGUCAGCgggcagguugcgCUCuGCAGCGGCAGCUCUGa -3' miRNA: 3'- -UAGUUG------------GAGcUGUUGUUGUCGAGGCc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 112813 | 0.71 | 0.90311 |
Target: 5'- -gCAACCUCGAgGcACGGCAGCaugCCGu -3' miRNA: 3'- uaGUUGGAGCUgU-UGUUGUCGa--GGCc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 16912 | 0.71 | 0.909466 |
Target: 5'- cGUCGGCCgcggaCGAUGGCGGCGGCguucuucCCGGu -3' miRNA: 3'- -UAGUUGGa----GCUGUUGUUGUCGa------GGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 37083 | 0.71 | 0.909466 |
Target: 5'- -cUAGCgaCG-CGGCGGCAGUUCCGGg -3' miRNA: 3'- uaGUUGgaGCuGUUGUUGUCGAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 110753 | 0.7 | 0.921427 |
Target: 5'- cGUCGcCCUCaagcGCAACAGCAGCUCUu- -3' miRNA: 3'- -UAGUuGGAGc---UGUUGUUGUCGAGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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