Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24500 | 5' | -51.2 | NC_005264.1 | + | 635 | 0.68 | 0.966218 |
Target: 5'- --aGGCgaCGAUAACGACAGCgaCCGGc -3' miRNA: 3'- uagUUGgaGCUGUUGUUGUCGa-GGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 160377 | 0.69 | 0.951244 |
Target: 5'- -gCAGCCgCGAaGGCc-CAGCUCCGGg -3' miRNA: 3'- uaGUUGGaGCUgUUGuuGUCGAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 112333 | 0.69 | 0.951244 |
Target: 5'- cUCGugUUCGGCuucGAgGGCAGCUuuGGg -3' miRNA: 3'- uAGUugGAGCUG---UUgUUGUCGAggCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 69148 | 0.69 | 0.951244 |
Target: 5'- gAUCGGCCagGAgaGACGugAGCUCgGGg -3' miRNA: 3'- -UAGUUGGagCUg-UUGUugUCGAGgCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 97601 | 0.69 | 0.951244 |
Target: 5'- -gCuuCCUCGGCcGCGGCGGCUaCGGc -3' miRNA: 3'- uaGuuGGAGCUGuUGUUGUCGAgGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 152384 | 0.69 | 0.951244 |
Target: 5'- -cCGGCCuaUCGGCGGCGAUccGCUUCGGa -3' miRNA: 3'- uaGUUGG--AGCUGUUGUUGu-CGAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 127250 | 0.69 | 0.959202 |
Target: 5'- -gCGGCCaUCGGCcgaagccGCAGCAGCUCCc- -3' miRNA: 3'- uaGUUGG-AGCUGu------UGUUGUCGAGGcc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 68377 | 0.69 | 0.962473 |
Target: 5'- -aCGACCUCGgugaagaGCAACGACucGCUCUGcGg -3' miRNA: 3'- uaGUUGGAGC-------UGUUGUUGu-CGAGGC-C- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 80409 | 0.69 | 0.964209 |
Target: 5'- uUCuACCgCGACGACAGCuGCugcccccgccagcucUCCGGg -3' miRNA: 3'- uAGuUGGaGCUGUUGUUGuCG---------------AGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 63575 | 0.69 | 0.9469 |
Target: 5'- aAUCcucCCUCGGgggcauCGACGAUGGCUCUGGg -3' miRNA: 3'- -UAGuu-GGAGCU------GUUGUUGUCGAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 32777 | 0.69 | 0.9469 |
Target: 5'- aAUCAucGCCaCGGCAGCGACGG-UCUGGc -3' miRNA: 3'- -UAGU--UGGaGCUGUUGUUGUCgAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 157232 | 0.7 | 0.937468 |
Target: 5'- -gCGGCC-CGAUA---GCGGCUCCGGu -3' miRNA: 3'- uaGUUGGaGCUGUuguUGUCGAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 72910 | 0.79 | 0.513693 |
Target: 5'- uUCGGCCUCGACAGCGucgaAGCcugCCGGu -3' miRNA: 3'- uAGUUGGAGCUGUUGUug--UCGa--GGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 125031 | 0.75 | 0.731775 |
Target: 5'- cGUCGGCCcCGACgGGCGGggaGGCUCCGGg -3' miRNA: 3'- -UAGUUGGaGCUG-UUGUUg--UCGAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 149633 | 0.73 | 0.808904 |
Target: 5'- -gCAGCC-CGGCGACGGCGGCggcgaCGGa -3' miRNA: 3'- uaGUUGGaGCUGUUGUUGUCGag---GCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 126018 | 0.72 | 0.85191 |
Target: 5'- gGUCuccuCCUCGGCGuggcccGCGGCGGCUCCu- -3' miRNA: 3'- -UAGuu--GGAGCUGU------UGUUGUCGAGGcc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 64902 | 0.72 | 0.875244 |
Target: 5'- --uGACCUCGAC-GCGA-AGCUCUGGa -3' miRNA: 3'- uagUUGGAGCUGuUGUUgUCGAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 2635 | 0.71 | 0.90311 |
Target: 5'- uGUCAGCgggcagguugcgCUCuGCAGCGGCAGCUCUGa -3' miRNA: 3'- -UAGUUG------------GAGcUGUUGUUGUCGAGGCc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 37083 | 0.71 | 0.909466 |
Target: 5'- -cUAGCgaCG-CGGCGGCAGUUCCGGg -3' miRNA: 3'- uaGUUGgaGCuGUUGUUGUCGAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 16912 | 0.71 | 0.909466 |
Target: 5'- cGUCGGCCgcggaCGAUGGCGGCGGCguucuucCCGGu -3' miRNA: 3'- -UAGUUGGa----GCUGUUGUUGUCGa------GGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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