miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24503 3' -55.4 NC_005264.1 + 121925 0.67 0.880125
Target:  5'- gGCGGGGaGGGCGAcGGcgagagcGACggaGUCGCCg -3'
miRNA:   3'- aCGUCCUaUCCGCU-CC-------UUGa--CGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 2899 0.67 0.880125
Target:  5'- gGCGGGGaGGGCGAcGGcgagagcGACggaGUCGCCg -3'
miRNA:   3'- aCGUCCUaUCCGCU-CC-------UUGa--CGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 94177 0.67 0.873637
Target:  5'- gGCAuGGAUuauuuGGgGGGGAAaCUGCagaGCCu -3'
miRNA:   3'- aCGU-CCUAu----CCgCUCCUU-GACGg--UGG- -5'
24503 3' -55.4 NC_005264.1 + 81897 0.67 0.873637
Target:  5'- gGCGGcGAUGGGCGGGcGA---GCCAgCa -3'
miRNA:   3'- aCGUC-CUAUCCGCUC-CUugaCGGUgG- -5'
24503 3' -55.4 NC_005264.1 + 20239 0.68 0.86622
Target:  5'- cGCGugacGGGUGGGC-AGGggUUGCgGCg -3'
miRNA:   3'- aCGU----CCUAUCCGcUCCuuGACGgUGg -5'
24503 3' -55.4 NC_005264.1 + 12541 0.68 0.86622
Target:  5'- gGUAGGA---GCGGGGGGCguucGCCGCg -3'
miRNA:   3'- aCGUCCUaucCGCUCCUUGa---CGGUGg -5'
24503 3' -55.4 NC_005264.1 + 131568 0.68 0.86622
Target:  5'- gGUAGGA---GCGGGGGGCguucGCCGCg -3'
miRNA:   3'- aCGUCCUaucCGCUCCUUGa---CGGUGg -5'
24503 3' -55.4 NC_005264.1 + 146595 0.68 0.858591
Target:  5'- uUGCGGGGUGGGCGuacacaGAACUGaUgGCa -3'
miRNA:   3'- -ACGUCCUAUCCGCuc----CUUGAC-GgUGg -5'
24503 3' -55.4 NC_005264.1 + 159334 0.68 0.858591
Target:  5'- gGC-GGAc-GGCGAGGAucccCUGCCccccGCCg -3'
miRNA:   3'- aCGuCCUauCCGCUCCUu---GACGG----UGG- -5'
24503 3' -55.4 NC_005264.1 + 40307 0.68 0.858591
Target:  5'- gGC-GGAc-GGCGAGGAucccCUGCCccccGCCg -3'
miRNA:   3'- aCGuCCUauCCGCUCCUu---GACGG----UGG- -5'
24503 3' -55.4 NC_005264.1 + 56129 0.68 0.858591
Target:  5'- cUGCAGGuaacGGCGAGcGAugUGUaCAUCu -3'
miRNA:   3'- -ACGUCCuau-CCGCUC-CUugACG-GUGG- -5'
24503 3' -55.4 NC_005264.1 + 16291 0.68 0.850755
Target:  5'- -cCAGGAUguagAGGCuGGGGAugUG-CGCCg -3'
miRNA:   3'- acGUCCUA----UCCG-CUCCUugACgGUGG- -5'
24503 3' -55.4 NC_005264.1 + 108507 0.68 0.83449
Target:  5'- aGUGGGGUAcGGCGucGuGC-GCCACCa -3'
miRNA:   3'- aCGUCCUAU-CCGCucCuUGaCGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 122745 0.68 0.833657
Target:  5'- cGUGGGAUgcgacgAGGaagacgaCGAGGAGCggggccucuUGCCGCCg -3'
miRNA:   3'- aCGUCCUA------UCC-------GCUCCUUG---------ACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 84805 0.68 0.826075
Target:  5'- gGCAGGGcauGGCGcacGGAGCgaaGCuCGCCg -3'
miRNA:   3'- aCGUCCUau-CCGCu--CCUUGa--CG-GUGG- -5'
24503 3' -55.4 NC_005264.1 + 120800 0.68 0.826075
Target:  5'- cGCGauuGGAUAGGCcgcgugcgcGucGAcACUGCCGCCg -3'
miRNA:   3'- aCGU---CCUAUCCG---------CucCU-UGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 7297 0.69 0.817482
Target:  5'- cGaCGGGAaAGGCGAacucugGGAACgaGCCGCg -3'
miRNA:   3'- aC-GUCCUaUCCGCU------CCUUGa-CGGUGg -5'
24503 3' -55.4 NC_005264.1 + 126324 0.69 0.817482
Target:  5'- cGaCGGGAaAGGCGAacucugGGAACgaGCCGCg -3'
miRNA:   3'- aC-GUCCUaUCCGCU------CCUUGa-CGGUGg -5'
24503 3' -55.4 NC_005264.1 + 47300 0.69 0.817482
Target:  5'- uUGCcauGAUGGcaGCGGGGAACUGcCCGCg -3'
miRNA:   3'- -ACGuc-CUAUC--CGCUCCUUGAC-GGUGg -5'
24503 3' -55.4 NC_005264.1 + 155272 0.69 0.817482
Target:  5'- cGCGGGGUAGGCGgcGGGGACgaugaUGUaGCg -3'
miRNA:   3'- aCGUCCUAUCCGC--UCCUUG-----ACGgUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.