miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24503 3' -55.4 NC_005264.1 + 160877 0.66 0.907353
Target:  5'- gUGCauauGGGAgcucgGGGgGGGGGGCaacgGCCGCg -3'
miRNA:   3'- -ACG----UCCUa----UCCgCUCCUUGa---CGGUGg -5'
24503 3' -55.4 NC_005264.1 + 162184 0.66 0.905493
Target:  5'- aGCGGGGaGGGgGGGGcgcGugagccucuaucgcGCUGCCugCg -3'
miRNA:   3'- aCGUCCUaUCCgCUCC---U--------------UGACGGugG- -5'
24503 3' -55.4 NC_005264.1 + 43157 0.66 0.905493
Target:  5'- aGCGGGGaGGGgGGGGcgcGugagccucuaucgcGCUGCCugCg -3'
miRNA:   3'- aCGUCCUaUCCgCUCC---U--------------UGACGGugG- -5'
24503 3' -55.4 NC_005264.1 + 102184 0.67 0.901072
Target:  5'- cGCgacgaAGGAaacgagcAGGCGGGGAucaaGCUGCUGCUc -3'
miRNA:   3'- aCG-----UCCUa------UCCGCUCCU----UGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 162671 0.67 0.901072
Target:  5'- gGCGGGucGUAGGUGuacGGucggcgcGCUGCgCGCCg -3'
miRNA:   3'- aCGUCC--UAUCCGCu--CCu------UGACG-GUGG- -5'
24503 3' -55.4 NC_005264.1 + 64424 0.67 0.901072
Target:  5'- cGCGGGcacGGCGAuGAcguCUGCCGCg -3'
miRNA:   3'- aCGUCCuauCCGCUcCUu--GACGGUGg -5'
24503 3' -55.4 NC_005264.1 + 39222 0.67 0.894557
Target:  5'- cGCGGcgcuGGCGGGGAGg-GCCugCg -3'
miRNA:   3'- aCGUCcuauCCGCUCCUUgaCGGugG- -5'
24503 3' -55.4 NC_005264.1 + 35734 0.67 0.894557
Target:  5'- aGuCAGGAUGgugccGGCGAGGAguACcgGUUGCCu -3'
miRNA:   3'- aC-GUCCUAU-----CCGCUCCU--UGa-CGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 72253 0.67 0.894557
Target:  5'- cGCGGGcaAGGCGc-GAcCUGCCGCg -3'
miRNA:   3'- aCGUCCuaUCCGCucCUuGACGGUGg -5'
24503 3' -55.4 NC_005264.1 + 101167 0.67 0.894557
Target:  5'- gUGCGaGAUAGGCGAGGAgaucguggaaGCguuugacGCUGCUg -3'
miRNA:   3'- -ACGUcCUAUCCGCUCCU----------UGa------CGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 158249 0.67 0.894557
Target:  5'- cGCGGcgcuGGCGGGGAGg-GCCugCg -3'
miRNA:   3'- aCGUCcuauCCGCUCCUUgaCGGugG- -5'
24503 3' -55.4 NC_005264.1 + 162290 0.67 0.887809
Target:  5'- cGCucGGGcAUAGGgGAGGGAacGCCGCg -3'
miRNA:   3'- aCG--UCC-UAUCCgCUCCUUgaCGGUGg -5'
24503 3' -55.4 NC_005264.1 + 53192 0.67 0.887809
Target:  5'- aUGC-GGA-AGGUGGGGGACgugGCCGa- -3'
miRNA:   3'- -ACGuCCUaUCCGCUCCUUGa--CGGUgg -5'
24503 3' -55.4 NC_005264.1 + 43263 0.67 0.887809
Target:  5'- cGCucGGGcAUAGGgGAGGGAacGCCGCg -3'
miRNA:   3'- aCG--UCC-UAUCCgCUCCUUgaCGGUGg -5'
24503 3' -55.4 NC_005264.1 + 67864 0.67 0.887809
Target:  5'- gGCuGGuuGUAGGCGuagaGGGAAUggGCCGCg -3'
miRNA:   3'- aCGuCC--UAUCCGC----UCCUUGa-CGGUGg -5'
24503 3' -55.4 NC_005264.1 + 83357 0.67 0.881542
Target:  5'- aGCAGGAgugcuaacauuaCGAGGAagaagcccaGCUGCCGCUc -3'
miRNA:   3'- aCGUCCUaucc--------GCUCCU---------UGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 106863 0.67 0.880835
Target:  5'- cUGCGGGGUcauGGGCGGGcacGAACgcagcgGCUuaaGCCg -3'
miRNA:   3'- -ACGUCCUA---UCCGCUC---CUUGa-----CGG---UGG- -5'
24503 3' -55.4 NC_005264.1 + 65872 0.67 0.880835
Target:  5'- cGCAGGGUGGGa-AGG-GCUGaCC-CCu -3'
miRNA:   3'- aCGUCCUAUCCgcUCCuUGAC-GGuGG- -5'
24503 3' -55.4 NC_005264.1 + 155737 0.67 0.880835
Target:  5'- cGCGGGGgguuauGGUGGGccgcCUGCUACCa -3'
miRNA:   3'- aCGUCCUau----CCGCUCcuu-GACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 97495 0.67 0.880835
Target:  5'- aGCGGuacaacauGAUAGauuGCcAGGAGCUGCCGCg -3'
miRNA:   3'- aCGUC--------CUAUC---CGcUCCUUGACGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.