miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24503 3' -55.4 NC_005264.1 + 5086 0.72 0.62079
Target:  5'- cGUGGGuu-GGCGAGGAGagccaguCUGCgGCCg -3'
miRNA:   3'- aCGUCCuauCCGCUCCUU-------GACGgUGG- -5'
24503 3' -55.4 NC_005264.1 + 150206 0.72 0.621818
Target:  5'- gGCcGGAgggcgagcgagUGGGaCGGGGGGCUGCgGCCc -3'
miRNA:   3'- aCGuCCU-----------AUCC-GCUCCUUGACGgUGG- -5'
24503 3' -55.4 NC_005264.1 + 31179 0.72 0.621818
Target:  5'- gGCcGGAgggcgagcgagUGGGaCGGGGGGCUGCgGCCc -3'
miRNA:   3'- aCGuCCU-----------AUCC-GCUCCUUGACGgUGG- -5'
24503 3' -55.4 NC_005264.1 + 20136 0.72 0.642386
Target:  5'- aUGCGGGc-AGGCGAuGGcGC-GCCGCCg -3'
miRNA:   3'- -ACGUCCuaUCCGCU-CCuUGaCGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 119125 0.72 0.646497
Target:  5'- cUGCuGGGggaGGGCGAGGAcgcaugggggagaaaAUgaaUGCCGCCg -3'
miRNA:   3'- -ACGuCCUa--UCCGCUCCU---------------UG---ACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 14052 0.72 0.652661
Target:  5'- gGCGGGGccGGGUG-GGAACgUGCaCGCCa -3'
miRNA:   3'- aCGUCCUa-UCCGCuCCUUG-ACG-GUGG- -5'
24503 3' -55.4 NC_005264.1 + 69404 0.72 0.662921
Target:  5'- gGCGGG-UAGGCGcGc--CUGCCGCCg -3'
miRNA:   3'- aCGUCCuAUCCGCuCcuuGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 150034 0.71 0.673155
Target:  5'- cGCGGGAgaucaucucucUGGGCGAcGG---UGCCGCCu -3'
miRNA:   3'- aCGUCCU-----------AUCCGCU-CCuugACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 37981 0.71 0.673155
Target:  5'- cGCGGcc-AGGCGAGuGGCgGCCACCg -3'
miRNA:   3'- aCGUCcuaUCCGCUCcUUGaCGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 157008 0.71 0.673155
Target:  5'- cGCGGcc-AGGCGAGuGGCgGCCACCg -3'
miRNA:   3'- aCGUCcuaUCCGCUCcUUGaCGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 31007 0.71 0.673155
Target:  5'- cGCGGGAgaucaucucucUGGGCGAcGG---UGCCGCCu -3'
miRNA:   3'- aCGUCCU-----------AUCCGCU-CCuugACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 31679 0.71 0.703619
Target:  5'- gGCAGGGcucucGGCGGGG--CUGcCCGCCa -3'
miRNA:   3'- aCGUCCUau---CCGCUCCuuGAC-GGUGG- -5'
24503 3' -55.4 NC_005264.1 + 45036 0.71 0.703619
Target:  5'- gGCAGGAUGgacGGCGAcgaGGA--UGCCGCg -3'
miRNA:   3'- aCGUCCUAU---CCGCU---CCUugACGGUGg -5'
24503 3' -55.4 NC_005264.1 + 150705 0.71 0.703619
Target:  5'- gGCAGGGcucucGGCGGGG--CUGcCCGCCa -3'
miRNA:   3'- aCGUCCUau---CCGCUCCuuGAC-GGUGG- -5'
24503 3' -55.4 NC_005264.1 + 120497 0.71 0.713664
Target:  5'- aGUAGGuggcggGGGCGAGGcccucauagacaAACUGCUugCc -3'
miRNA:   3'- aCGUCCua----UCCGCUCC------------UUGACGGugG- -5'
24503 3' -55.4 NC_005264.1 + 3458 0.71 0.713664
Target:  5'- cGCcacgAGGGUcucggGGGCGAuGGGcUUGCCGCCg -3'
miRNA:   3'- aCG----UCCUA-----UCCGCU-CCUuGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 122485 0.71 0.713664
Target:  5'- cGCcacgAGGGUcucggGGGCGAuGGGcUUGCCGCCg -3'
miRNA:   3'- aCG----UCCUA-----UCCGCU-CCUuGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 25166 0.7 0.720655
Target:  5'- gGCAGGGgguGGCGGGGcaagaaagaaaucuGAggGCCGCCc -3'
miRNA:   3'- aCGUCCUau-CCGCUCC--------------UUgaCGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 54266 0.7 0.723639
Target:  5'- aGUGGGAgcgGGGCGAGGAcCaugGCCAa- -3'
miRNA:   3'- aCGUCCUa--UCCGCUCCUuGa--CGGUgg -5'
24503 3' -55.4 NC_005264.1 + 37114 0.7 0.730575
Target:  5'- gGCAGGAcgaGGGCGAGGcGgccgucucggccucGCUGCUggcGCCa -3'
miRNA:   3'- aCGUCCUa--UCCGCUCC-U--------------UGACGG---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.