miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24503 3' -55.4 NC_005264.1 + 151461 1.12 0.001904
Target:  5'- cUGCAGGAUAGGCGAGGAACUGCCACCg -3'
miRNA:   3'- -ACGUCCUAUCCGCUCCUUGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 32434 1.12 0.001904
Target:  5'- cUGCAGGAUAGGCGAGGAACUGCCACCg -3'
miRNA:   3'- -ACGUCCUAUCCGCUCCUUGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 128972 0.8 0.265844
Target:  5'- aGCAGaGAcgccGGCGAGGGACUGCCggACCc -3'
miRNA:   3'- aCGUC-CUau--CCGCUCCUUGACGG--UGG- -5'
24503 3' -55.4 NC_005264.1 + 9946 0.8 0.265844
Target:  5'- aGCAGaGAcgccGGCGAGGGACUGCCggACCc -3'
miRNA:   3'- aCGUC-CUau--CCGCUCCUUGACGG--UGG- -5'
24503 3' -55.4 NC_005264.1 + 130366 0.77 0.383299
Target:  5'- ---cGGAccguucuGGCGAGGAACUGCCAUCu -3'
miRNA:   3'- acguCCUau-----CCGCUCCUUGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 11339 0.77 0.383299
Target:  5'- ---cGGAccguucuGGCGAGGAACUGCCAUCu -3'
miRNA:   3'- acguCCUau-----CCGCUCCUUGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 153433 0.76 0.435409
Target:  5'- cGCuaauGG--GGGCGGGGGAUUGCCugCg -3'
miRNA:   3'- aCGu---CCuaUCCGCUCCUUGACGGugG- -5'
24503 3' -55.4 NC_005264.1 + 34406 0.76 0.435409
Target:  5'- cGCuaauGG--GGGCGGGGGAUUGCCugCg -3'
miRNA:   3'- aCGu---CCuaUCCGCUCCUUGACGGugG- -5'
24503 3' -55.4 NC_005264.1 + 122429 0.75 0.453669
Target:  5'- cGCGGGGUcggugcgcGGGgGAGGGACguaggGCCGCg -3'
miRNA:   3'- aCGUCCUA--------UCCgCUCCUUGa----CGGUGg -5'
24503 3' -55.4 NC_005264.1 + 3402 0.75 0.453669
Target:  5'- cGCGGGGUcggugcgcGGGgGAGGGACguaggGCCGCg -3'
miRNA:   3'- aCGUCCUA--------UCCgCUCCUUGa----CGGUGg -5'
24503 3' -55.4 NC_005264.1 + 67043 0.75 0.469512
Target:  5'- -uCAGGAUAGGCuacaccgcccaccuGAGGAAg-GCCACCa -3'
miRNA:   3'- acGUCCUAUCCG--------------CUCCUUgaCGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 125739 0.75 0.481815
Target:  5'- aGUAGu-UGGGCGccguccccGGAACUGCCGCCg -3'
miRNA:   3'- aCGUCcuAUCCGCu-------CCUUGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 158467 0.75 0.490423
Target:  5'- cGgGGGAUuucgcucAGGaGAGaGAGCUGCCGCCg -3'
miRNA:   3'- aCgUCCUA-------UCCgCUC-CUUGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 125158 0.74 0.501041
Target:  5'- gUGCGGGA-GGGCGAGG-GCcGCgCGCCc -3'
miRNA:   3'- -ACGUCCUaUCCGCUCCuUGaCG-GUGG- -5'
24503 3' -55.4 NC_005264.1 + 6131 0.74 0.501041
Target:  5'- gUGCGGGA-GGGCGAGG-GCcGCgCGCCc -3'
miRNA:   3'- -ACGUCCUaUCCGCUCCuUGaCG-GUGG- -5'
24503 3' -55.4 NC_005264.1 + 39809 0.74 0.520597
Target:  5'- aGCcccuGGUGGGCGAGGaggcAugUGCCGCCc -3'
miRNA:   3'- aCGuc--CUAUCCGCUCC----UugACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 158835 0.74 0.520597
Target:  5'- aGCcccuGGUGGGCGAGGaggcAugUGCCGCCc -3'
miRNA:   3'- aCGuc--CUAUCCGCUCC----UugACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 90995 0.73 0.56054
Target:  5'- aGCAaguagaacGGAUGGGCuacgGAGGAcccauGCUGCCGCg -3'
miRNA:   3'- aCGU--------CCUAUCCG----CUCCU-----UGACGGUGg -5'
24503 3' -55.4 NC_005264.1 + 106735 0.73 0.601281
Target:  5'- cGacaAGGAUGGuGCGGGGGA--GCCGCCu -3'
miRNA:   3'- aCg--UCCUAUC-CGCUCCUUgaCGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 91905 0.72 0.611542
Target:  5'- gGCAGcGAUGGGCG-GGcGCgGCgACCa -3'
miRNA:   3'- aCGUC-CUAUCCGCuCCuUGaCGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.