miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24503 3' -55.4 NC_005264.1 + 1138 0.66 0.924762
Target:  5'- ---cGGAcGGGCGcacGGGACgauccgGCCGCCa -3'
miRNA:   3'- acguCCUaUCCGCu--CCUUGa-----CGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 2899 0.67 0.880125
Target:  5'- gGCGGGGaGGGCGAcGGcgagagcGACggaGUCGCCg -3'
miRNA:   3'- aCGUCCUaUCCGCU-CC-------UUGa--CGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 3402 0.75 0.453669
Target:  5'- cGCGGGGUcggugcgcGGGgGAGGGACguaggGCCGCg -3'
miRNA:   3'- aCGUCCUA--------UCCgCUCCUUGa----CGGUGg -5'
24503 3' -55.4 NC_005264.1 + 3458 0.71 0.713664
Target:  5'- cGCcacgAGGGUcucggGGGCGAuGGGcUUGCCGCCg -3'
miRNA:   3'- aCG----UCCUA-----UCCGCU-CCUuGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 3684 0.66 0.917483
Target:  5'- gUGCGGGGccuGGCGcGGAAagggcgcacaguacUUGCCGCg -3'
miRNA:   3'- -ACGUCCUau-CCGCuCCUU--------------GACGGUGg -5'
24503 3' -55.4 NC_005264.1 + 3718 0.7 0.742365
Target:  5'- cGUGGGAUGcGGacgaggaagacgaCGAGGAGCggggccucuUGCCGCCg -3'
miRNA:   3'- aCGUCCUAU-CC-------------GCUCCUUG---------ACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 5086 0.72 0.62079
Target:  5'- cGUGGGuu-GGCGAGGAGagccaguCUGCgGCCg -3'
miRNA:   3'- aCGUCCuauCCGCUCCUU-------GACGgUGG- -5'
24503 3' -55.4 NC_005264.1 + 6131 0.74 0.501041
Target:  5'- gUGCGGGA-GGGCGAGG-GCcGCgCGCCc -3'
miRNA:   3'- -ACGUCCUaUCCGCUCCuUGaCG-GUGG- -5'
24503 3' -55.4 NC_005264.1 + 6401 0.66 0.913396
Target:  5'- aGUGGGAUaucgAGGCGAuc-ACcGCCGCCa -3'
miRNA:   3'- aCGUCCUA----UCCGCUccuUGaCGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 7297 0.69 0.817482
Target:  5'- cGaCGGGAaAGGCGAacucugGGAACgaGCCGCg -3'
miRNA:   3'- aC-GUCCUaUCCGCU------CCUUGa-CGGUGg -5'
24503 3' -55.4 NC_005264.1 + 8004 0.7 0.75305
Target:  5'- uUGCGGGGccGGCaGAGGcgcccgccacGACggcGCCACCg -3'
miRNA:   3'- -ACGUCCUauCCG-CUCC----------UUGa--CGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 9946 0.8 0.265844
Target:  5'- aGCAGaGAcgccGGCGAGGGACUGCCggACCc -3'
miRNA:   3'- aCGUC-CUau--CCGCUCCUUGACGG--UGG- -5'
24503 3' -55.4 NC_005264.1 + 11339 0.77 0.383299
Target:  5'- ---cGGAccguucuGGCGAGGAACUGCCAUCu -3'
miRNA:   3'- acguCCUau-----CCGCUCCUUGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 12541 0.68 0.86622
Target:  5'- gGUAGGA---GCGGGGGGCguucGCCGCg -3'
miRNA:   3'- aCGUCCUaucCGCUCCUUGa---CGGUGg -5'
24503 3' -55.4 NC_005264.1 + 13331 0.69 0.808718
Target:  5'- aGCAGGAggagaggGGcGCGAGGAugaACgucgggGCCgaGCCg -3'
miRNA:   3'- aCGUCCUa------UC-CGCUCCU---UGa-----CGG--UGG- -5'
24503 3' -55.4 NC_005264.1 + 13901 0.7 0.733535
Target:  5'- cUGCAGGcgacgGGGCGcgaacguccAGGAggcaaaGCUGCCGCa -3'
miRNA:   3'- -ACGUCCua---UCCGC---------UCCU------UGACGGUGg -5'
24503 3' -55.4 NC_005264.1 + 14052 0.72 0.652661
Target:  5'- gGCGGGGccGGGUG-GGAACgUGCaCGCCa -3'
miRNA:   3'- aCGUCCUa-UCCGCuCCUUG-ACG-GUGG- -5'
24503 3' -55.4 NC_005264.1 + 16291 0.68 0.850755
Target:  5'- -cCAGGAUguagAGGCuGGGGAugUG-CGCCg -3'
miRNA:   3'- acGUCCUA----UCCG-CUCCUugACgGUGG- -5'
24503 3' -55.4 NC_005264.1 + 20136 0.72 0.642386
Target:  5'- aUGCGGGc-AGGCGAuGGcGC-GCCGCCg -3'
miRNA:   3'- -ACGUCCuaUCCGCU-CCuUGaCGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 20239 0.68 0.86622
Target:  5'- cGCGugacGGGUGGGC-AGGggUUGCgGCg -3'
miRNA:   3'- aCGU----CCUAUCCGcUCCuuGACGgUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.