Results 21 - 40 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24503 | 3' | -55.4 | NC_005264.1 | + | 25166 | 0.7 | 0.720655 |
Target: 5'- gGCAGGGgguGGCGGGGcaagaaagaaaucuGAggGCCGCCc -3' miRNA: 3'- aCGUCCUau-CCGCUCC--------------UUgaCGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 28042 | 0.66 | 0.924762 |
Target: 5'- --aAGGAUugGGGCGAGGAuucgcgaugugcGCcaUGCgACCg -3' miRNA: 3'- acgUCCUA--UCCGCUCCU------------UG--ACGgUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 28424 | 0.66 | 0.930083 |
Target: 5'- cGCGGGGUAGGacCGAacGGcAGCUGCguuagguaACCg -3' miRNA: 3'- aCGUCCUAUCC--GCU--CC-UUGACGg-------UGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 28874 | 0.7 | 0.743342 |
Target: 5'- cGCGGGcUAGGUuucauGAACUGCUGCCa -3' miRNA: 3'- aCGUCCuAUCCGcuc--CUUGACGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 31007 | 0.71 | 0.673155 |
Target: 5'- cGCGGGAgaucaucucucUGGGCGAcGG---UGCCGCCu -3' miRNA: 3'- aCGUCCU-----------AUCCGCU-CCuugACGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 31179 | 0.72 | 0.621818 |
Target: 5'- gGCcGGAgggcgagcgagUGGGaCGGGGGGCUGCgGCCc -3' miRNA: 3'- aCGuCCU-----------AUCC-GCUCCUUGACGgUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 31679 | 0.71 | 0.703619 |
Target: 5'- gGCAGGGcucucGGCGGGG--CUGcCCGCCa -3' miRNA: 3'- aCGUCCUau---CCGCUCCuuGAC-GGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 32353 | 0.66 | 0.921453 |
Target: 5'- cGgGGGGUGcuucggggcuguucuGGCGAGGAuGCcgGCgGCCg -3' miRNA: 3'- aCgUCCUAU---------------CCGCUCCU-UGa-CGgUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 32434 | 1.12 | 0.001904 |
Target: 5'- cUGCAGGAUAGGCGAGGAACUGCCACCg -3' miRNA: 3'- -ACGUCCUAUCCGCUCCUUGACGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 34406 | 0.76 | 0.435409 |
Target: 5'- cGCuaauGG--GGGCGGGGGAUUGCCugCg -3' miRNA: 3'- aCGu---CCuaUCCGCUCCUUGACGGugG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 35734 | 0.67 | 0.894557 |
Target: 5'- aGuCAGGAUGgugccGGCGAGGAguACcgGUUGCCu -3' miRNA: 3'- aC-GUCCUAU-----CCGCUCCU--UGa-CGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 36271 | 0.66 | 0.935163 |
Target: 5'- gGUAGGccguccucgugcGUAGGCGAGGAgagggcggACgucGUCGCUa -3' miRNA: 3'- aCGUCC------------UAUCCGCUCCU--------UGa--CGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 37114 | 0.7 | 0.730575 |
Target: 5'- gGCAGGAcgaGGGCGAGGcGgccgucucggccucGCUGCUggcGCCa -3' miRNA: 3'- aCGUCCUa--UCCGCUCC-U--------------UGACGG---UGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 37981 | 0.71 | 0.673155 |
Target: 5'- cGCGGcc-AGGCGAGuGGCgGCCACCg -3' miRNA: 3'- aCGUCcuaUCCGCUCcUUGaCGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 39222 | 0.67 | 0.894557 |
Target: 5'- cGCGGcgcuGGCGGGGAGg-GCCugCg -3' miRNA: 3'- aCGUCcuauCCGCUCCUUgaCGGugG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 39809 | 0.74 | 0.520597 |
Target: 5'- aGCcccuGGUGGGCGAGGaggcAugUGCCGCCc -3' miRNA: 3'- aCGuc--CUAUCCGCUCC----UugACGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 40307 | 0.68 | 0.858591 |
Target: 5'- gGC-GGAc-GGCGAGGAucccCUGCCccccGCCg -3' miRNA: 3'- aCGuCCUauCCGCUCCUu---GACGG----UGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 41851 | 0.66 | 0.907353 |
Target: 5'- gUGCauauGGGAgcucgGGGgGGGGGGCaacgGCCGCg -3' miRNA: 3'- -ACG----UCCUa----UCCgCUCCUUGa---CGGUGg -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 43157 | 0.66 | 0.905493 |
Target: 5'- aGCGGGGaGGGgGGGGcgcGugagccucuaucgcGCUGCCugCg -3' miRNA: 3'- aCGUCCUaUCCgCUCC---U--------------UGACGGugG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 43263 | 0.67 | 0.887809 |
Target: 5'- cGCucGGGcAUAGGgGAGGGAacGCCGCg -3' miRNA: 3'- aCG--UCC-UAUCCgCUCCUUgaCGGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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