Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24503 | 3' | -55.4 | NC_005264.1 | + | 127031 | 0.7 | 0.75305 |
Target: 5'- uUGCGGGGccGGCaGAGGcgcccgccacGACggcGCCACCg -3' miRNA: 3'- -ACGUCCUauCCG-CUCC----------UUGa--CGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 14052 | 0.72 | 0.652661 |
Target: 5'- gGCGGGGccGGGUG-GGAACgUGCaCGCCa -3' miRNA: 3'- aCGUCCUa-UCCGCuCCUUG-ACG-GUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 150034 | 0.71 | 0.673155 |
Target: 5'- cGCGGGAgaucaucucucUGGGCGAcGG---UGCCGCCu -3' miRNA: 3'- aCGUCCU-----------AUCCGCU-CCuugACGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 157008 | 0.71 | 0.673155 |
Target: 5'- cGCGGcc-AGGCGAGuGGCgGCCACCg -3' miRNA: 3'- aCGUCcuaUCCGCUCcUUGaCGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 150705 | 0.71 | 0.703619 |
Target: 5'- gGCAGGGcucucGGCGGGG--CUGcCCGCCa -3' miRNA: 3'- aCGUCCUau---CCGCUCCuuGAC-GGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 122485 | 0.71 | 0.713664 |
Target: 5'- cGCcacgAGGGUcucggGGGCGAuGGGcUUGCCGCCg -3' miRNA: 3'- aCG----UCCUA-----UCCGCU-CCUuGACGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 25166 | 0.7 | 0.720655 |
Target: 5'- gGCAGGGgguGGCGGGGcaagaaagaaaucuGAggGCCGCCc -3' miRNA: 3'- aCGUCCUau-CCGCUCC--------------UUgaCGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 156141 | 0.7 | 0.730575 |
Target: 5'- gGCAGGAcgaGGGCGAGGcGgccgucucggccucGCUGCUggcGCCa -3' miRNA: 3'- aCGUCCUa--UCCGCUCC-U--------------UGACGG---UGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 13901 | 0.7 | 0.733535 |
Target: 5'- cUGCAGGcgacgGGGCGcgaacguccAGGAggcaaaGCUGCCGCa -3' miRNA: 3'- -ACGUCCua---UCCGC---------UCCU------UGACGGUGg -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 150206 | 0.72 | 0.621818 |
Target: 5'- gGCcGGAgggcgagcgagUGGGaCGGGGGGCUGCgGCCc -3' miRNA: 3'- aCGuCCU-----------AUCC-GCUCCUUGACGgUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 5086 | 0.72 | 0.62079 |
Target: 5'- cGUGGGuu-GGCGAGGAGagccaguCUGCgGCCg -3' miRNA: 3'- aCGUCCuauCCGCUCCUU-------GACGgUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 91905 | 0.72 | 0.611542 |
Target: 5'- gGCAGcGAUGGGCG-GGcGCgGCgACCa -3' miRNA: 3'- aCGUC-CUAUCCGCuCCuUGaCGgUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 128972 | 0.8 | 0.265844 |
Target: 5'- aGCAGaGAcgccGGCGAGGGACUGCCggACCc -3' miRNA: 3'- aCGUC-CUau--CCGCUCCUUGACGG--UGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 130366 | 0.77 | 0.383299 |
Target: 5'- ---cGGAccguucuGGCGAGGAACUGCCAUCu -3' miRNA: 3'- acguCCUau-----CCGCUCCUUGACGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 153433 | 0.76 | 0.435409 |
Target: 5'- cGCuaauGG--GGGCGGGGGAUUGCCugCg -3' miRNA: 3'- aCGu---CCuaUCCGCUCCUUGACGGugG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 122429 | 0.75 | 0.453669 |
Target: 5'- cGCGGGGUcggugcgcGGGgGAGGGACguaggGCCGCg -3' miRNA: 3'- aCGUCCUA--------UCCgCUCCUUGa----CGGUGg -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 125158 | 0.74 | 0.501041 |
Target: 5'- gUGCGGGA-GGGCGAGG-GCcGCgCGCCc -3' miRNA: 3'- -ACGUCCUaUCCGCUCCuUGaCG-GUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 158835 | 0.74 | 0.520597 |
Target: 5'- aGCcccuGGUGGGCGAGGaggcAugUGCCGCCc -3' miRNA: 3'- aCGuc--CUAUCCGCUCC----UugACGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 90995 | 0.73 | 0.56054 |
Target: 5'- aGCAaguagaacGGAUGGGCuacgGAGGAcccauGCUGCCGCg -3' miRNA: 3'- aCGU--------CCUAUCCG----CUCCU-----UGACGGUGg -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 106735 | 0.73 | 0.601281 |
Target: 5'- cGacaAGGAUGGuGCGGGGGA--GCCGCCu -3' miRNA: 3'- aCg--UCCUAUC-CGCUCCUUgaCGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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