Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24503 | 3' | -55.4 | NC_005264.1 | + | 36271 | 0.66 | 0.935163 |
Target: 5'- gGUAGGccguccucgugcGUAGGCGAGGAgagggcggACgucGUCGCUa -3' miRNA: 3'- aCGUCC------------UAUCCGCUCCU--------UGa--CGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 72253 | 0.67 | 0.894557 |
Target: 5'- cGCGGGcaAGGCGc-GAcCUGCCGCg -3' miRNA: 3'- aCGUCCuaUCCGCucCUuGACGGUGg -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 43263 | 0.67 | 0.887809 |
Target: 5'- cGCucGGGcAUAGGgGAGGGAacGCCGCg -3' miRNA: 3'- aCG--UCC-UAUCCgCUCCUUgaCGGUGg -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 32434 | 1.12 | 0.001904 |
Target: 5'- cUGCAGGAUAGGCGAGGAACUGCCACCg -3' miRNA: 3'- -ACGUCCUAUCCGCUCCUUGACGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 28042 | 0.66 | 0.924762 |
Target: 5'- --aAGGAUugGGGCGAGGAuucgcgaugugcGCcaUGCgACCg -3' miRNA: 3'- acgUCCUA--UCCGCUCCU------------UG--ACGgUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 1138 | 0.66 | 0.924762 |
Target: 5'- ---cGGAcGGGCGcacGGGACgauccgGCCGCCa -3' miRNA: 3'- acguCCUaUCCGCu--CCUUGa-----CGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 32353 | 0.66 | 0.921453 |
Target: 5'- cGgGGGGUGcuucggggcuguucuGGCGAGGAuGCcgGCgGCCg -3' miRNA: 3'- aCgUCCUAU---------------CCGCUCCU-UGa-CGgUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 84179 | 0.66 | 0.919199 |
Target: 5'- cGCcGGcacauaGUGGGaCGAGGcACaggGCCGCCg -3' miRNA: 3'- aCGuCC------UAUCC-GCUCCuUGa--CGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 41851 | 0.66 | 0.907353 |
Target: 5'- gUGCauauGGGAgcucgGGGgGGGGGGCaacgGCCGCg -3' miRNA: 3'- -ACG----UCCUa----UCCgCUCCUUGa---CGGUGg -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 101167 | 0.67 | 0.894557 |
Target: 5'- gUGCGaGAUAGGCGAGGAgaucguggaaGCguuugacGCUGCUg -3' miRNA: 3'- -ACGUcCUAUCCGCUCCU----------UGa------CGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 43157 | 0.66 | 0.905493 |
Target: 5'- aGCGGGGaGGGgGGGGcgcGugagccucuaucgcGCUGCCugCg -3' miRNA: 3'- aCGUCCUaUCCgCUCC---U--------------UGACGGugG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 96276 | 0.66 | 0.913396 |
Target: 5'- aGCAGGu--GGCGGcGGAGCUuGUggaaauCGCCg -3' miRNA: 3'- aCGUCCuauCCGCU-CCUUGA-CG------GUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 45771 | 0.66 | 0.930083 |
Target: 5'- aGaCAGcGAUGGGCGccGGAGCgGCUAUUg -3' miRNA: 3'- aC-GUC-CUAUCCGCu-CCUUGaCGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 102184 | 0.67 | 0.901072 |
Target: 5'- cGCgacgaAGGAaacgagcAGGCGGGGAucaaGCUGCUGCUc -3' miRNA: 3'- aCG-----UCCUa------UCCGCUCCU----UGACGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 135449 | 0.66 | 0.924762 |
Target: 5'- cGCcuaagAGGGUagAGGCGAGGAucaucaauacguGCUccauuaGCCAUCa -3' miRNA: 3'- aCG-----UCCUA--UCCGCUCCU------------UGA------CGGUGG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 109829 | 0.66 | 0.919199 |
Target: 5'- gUGCAGGuugcggAGGCaGAGGAuuUUGcCCGCg -3' miRNA: 3'- -ACGUCCua----UCCG-CUCCUu-GAC-GGUGg -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 39222 | 0.67 | 0.894557 |
Target: 5'- cGCGGcgcuGGCGGGGAGg-GCCugCg -3' miRNA: 3'- aCGUCcuauCCGCUCCUUgaCGGugG- -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 53192 | 0.67 | 0.887809 |
Target: 5'- aUGC-GGA-AGGUGGGGGACgugGCCGa- -3' miRNA: 3'- -ACGuCCUaUCCGCUCCUUGa--CGGUgg -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 134457 | 0.66 | 0.924762 |
Target: 5'- -cCAGGAUcGGCauGGGGGACaauucUGCCGCa -3' miRNA: 3'- acGUCCUAuCCG--CUCCUUG-----ACGGUGg -5' |
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24503 | 3' | -55.4 | NC_005264.1 | + | 148978 | 0.66 | 0.924762 |
Target: 5'- aGCAGGucGUGGGUGAuGggUUGuCCAUUg -3' miRNA: 3'- aCGUCC--UAUCCGCUcCuuGAC-GGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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