miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24503 3' -55.4 NC_005264.1 + 162671 0.67 0.901072
Target:  5'- gGCGGGucGUAGGUGuacGGucggcgcGCUGCgCGCCg -3'
miRNA:   3'- aCGUCC--UAUCCGCu--CCu------UGACG-GUGG- -5'
24503 3' -55.4 NC_005264.1 + 162290 0.67 0.887809
Target:  5'- cGCucGGGcAUAGGgGAGGGAacGCCGCg -3'
miRNA:   3'- aCG--UCC-UAUCCgCUCCUUgaCGGUGg -5'
24503 3' -55.4 NC_005264.1 + 162184 0.66 0.905493
Target:  5'- aGCGGGGaGGGgGGGGcgcGugagccucuaucgcGCUGCCugCg -3'
miRNA:   3'- aCGUCCUaUCCgCUCC---U--------------UGACGGugG- -5'
24503 3' -55.4 NC_005264.1 + 160877 0.66 0.907353
Target:  5'- gUGCauauGGGAgcucgGGGgGGGGGGCaacgGCCGCg -3'
miRNA:   3'- -ACG----UCCUa----UCCgCUCCUUGa---CGGUGg -5'
24503 3' -55.4 NC_005264.1 + 159334 0.68 0.858591
Target:  5'- gGC-GGAc-GGCGAGGAucccCUGCCccccGCCg -3'
miRNA:   3'- aCGuCCUauCCGCUCCUu---GACGG----UGG- -5'
24503 3' -55.4 NC_005264.1 + 158835 0.74 0.520597
Target:  5'- aGCcccuGGUGGGCGAGGaggcAugUGCCGCCc -3'
miRNA:   3'- aCGuc--CUAUCCGCUCC----UugACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 158467 0.75 0.490423
Target:  5'- cGgGGGAUuucgcucAGGaGAGaGAGCUGCCGCCg -3'
miRNA:   3'- aCgUCCUA-------UCCgCUC-CUUGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 158249 0.67 0.894557
Target:  5'- cGCGGcgcuGGCGGGGAGg-GCCugCg -3'
miRNA:   3'- aCGUCcuauCCGCUCCUUgaCGGugG- -5'
24503 3' -55.4 NC_005264.1 + 157008 0.71 0.673155
Target:  5'- cGCGGcc-AGGCGAGuGGCgGCCACCg -3'
miRNA:   3'- aCGUCcuaUCCGCUCcUUGaCGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 156141 0.7 0.730575
Target:  5'- gGCAGGAcgaGGGCGAGGcGgccgucucggccucGCUGCUggcGCCa -3'
miRNA:   3'- aCGUCCUa--UCCGCUCC-U--------------UGACGG---UGG- -5'
24503 3' -55.4 NC_005264.1 + 155737 0.67 0.880835
Target:  5'- cGCGGGGgguuauGGUGGGccgcCUGCUACCa -3'
miRNA:   3'- aCGUCCUau----CCGCUCcuu-GACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 155298 0.66 0.935163
Target:  5'- gGUAGGccguccucgugcGUAGGCGAGGAgagggcggACgucGUCGCUa -3'
miRNA:   3'- aCGUCC------------UAUCCGCUCCU--------UGa--CGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 155272 0.69 0.817482
Target:  5'- cGCGGGGUAGGCGgcGGGGACgaugaUGUaGCg -3'
miRNA:   3'- aCGUCCUAUCCGC--UCCUUG-----ACGgUGg -5'
24503 3' -55.4 NC_005264.1 + 153433 0.76 0.435409
Target:  5'- cGCuaauGG--GGGCGGGGGAUUGCCugCg -3'
miRNA:   3'- aCGu---CCuaUCCGCUCCUUGACGGugG- -5'
24503 3' -55.4 NC_005264.1 + 151461 1.12 0.001904
Target:  5'- cUGCAGGAUAGGCGAGGAACUGCCACCg -3'
miRNA:   3'- -ACGUCCUAUCCGCUCCUUGACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 151380 0.66 0.921453
Target:  5'- cGgGGGGUGcuucggggcuguucuGGCGAGGAuGCcgGCgGCCg -3'
miRNA:   3'- aCgUCCUAU---------------CCGCUCCU-UGa-CGgUGG- -5'
24503 3' -55.4 NC_005264.1 + 150705 0.71 0.703619
Target:  5'- gGCAGGGcucucGGCGGGG--CUGcCCGCCa -3'
miRNA:   3'- aCGUCCUau---CCGCUCCuuGAC-GGUGG- -5'
24503 3' -55.4 NC_005264.1 + 150206 0.72 0.621818
Target:  5'- gGCcGGAgggcgagcgagUGGGaCGGGGGGCUGCgGCCc -3'
miRNA:   3'- aCGuCCU-----------AUCC-GCUCCUUGACGgUGG- -5'
24503 3' -55.4 NC_005264.1 + 150034 0.71 0.673155
Target:  5'- cGCGGGAgaucaucucucUGGGCGAcGG---UGCCGCCu -3'
miRNA:   3'- aCGUCCU-----------AUCCGCU-CCuugACGGUGG- -5'
24503 3' -55.4 NC_005264.1 + 148978 0.66 0.924762
Target:  5'- aGCAGGucGUGGGUGAuGggUUGuCCAUUg -3'
miRNA:   3'- aCGUCC--UAUCCGCUcCuuGAC-GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.