miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24517 3' -48.3 NC_005264.1 + 148239 0.66 0.999777
Target:  5'- aCGGGAGAGAUcuUCUGcg-CGUUCUc-- -3'
miRNA:   3'- -GCCCUUUCUA--AGGCauaGCGAGAacg -5'
24517 3' -48.3 NC_005264.1 + 147010 0.66 0.999633
Target:  5'- uGGGcGGAGAUUUcuuccagCGUAUUGUUCaUUGCu -3'
miRNA:   3'- gCCC-UUUCUAAG-------GCAUAGCGAG-AACG- -5'
24517 3' -48.3 NC_005264.1 + 148284 0.66 0.99955
Target:  5'- cCGGcGGGAGAUUCUGgagaccgCGCgcgUGCg -3'
miRNA:   3'- -GCC-CUUUCUAAGGCaua----GCGagaACG- -5'
24517 3' -48.3 NC_005264.1 + 7429 0.67 0.999144
Target:  5'- gGGGAGGGAUUC-GUAUUcCUCUUcGUc -3'
miRNA:   3'- gCCCUUUCUAAGgCAUAGcGAGAA-CG- -5'
24517 3' -48.3 NC_005264.1 + 152766 0.67 0.999144
Target:  5'- cCGGcGGGAGAUUCCGc--CGCggcUGCa -3'
miRNA:   3'- -GCC-CUUUCUAAGGCauaGCGagaACG- -5'
24517 3' -48.3 NC_005264.1 + 126456 0.67 0.999144
Target:  5'- gGGGAGGGAUUC-GUAUUcCUCUUcGUc -3'
miRNA:   3'- gCCCUUUCUAAGgCAUAGcGAGAA-CG- -5'
24517 3' -48.3 NC_005264.1 + 152501 0.67 0.998953
Target:  5'- aGGGGGAGcauuuuccucGUUCCGcgcUUGCUCagUGCg -3'
miRNA:   3'- gCCCUUUC----------UAAGGCau-AGCGAGa-ACG- -5'
24517 3' -48.3 NC_005264.1 + 33474 0.67 0.998953
Target:  5'- aGGGGGAGcauuuuccucGUUCCGcgcUUGCUCagUGCg -3'
miRNA:   3'- gCCCUUUC----------UAAGGCau-AGCGAGa-ACG- -5'
24517 3' -48.3 NC_005264.1 + 96998 0.67 0.998953
Target:  5'- uGGGAAGGG---CGUAUCGUuaUCUcGCg -3'
miRNA:   3'- gCCCUUUCUaagGCAUAGCG--AGAaCG- -5'
24517 3' -48.3 NC_005264.1 + 36044 0.67 0.998726
Target:  5'- gCGGGAAAaGUUCCuGUAcUUGCUCagcaacgUGCu -3'
miRNA:   3'- -GCCCUUUcUAAGG-CAU-AGCGAGa------ACG- -5'
24517 3' -48.3 NC_005264.1 + 149701 0.68 0.997779
Target:  5'- uCGGG-AAGAgaCCGUAUCcccuagaaGCgCUUGCu -3'
miRNA:   3'- -GCCCuUUCUaaGGCAUAG--------CGaGAACG- -5'
24517 3' -48.3 NC_005264.1 + 44301 0.68 0.997355
Target:  5'- gCGGGAGAGAag-CGUggUGCgaagCUUGCu -3'
miRNA:   3'- -GCCCUUUCUaagGCAuaGCGa---GAACG- -5'
24517 3' -48.3 NC_005264.1 + 27837 0.69 0.995593
Target:  5'- aGGGgcAGAcUCCGUcuccagcGUCGaagCUUGCg -3'
miRNA:   3'- gCCCuuUCUaAGGCA-------UAGCga-GAACG- -5'
24517 3' -48.3 NC_005264.1 + 153500 0.69 0.994104
Target:  5'- uCGGGAA--AUUCCcugAUCGCUCUgGUa -3'
miRNA:   3'- -GCCCUUucUAAGGca-UAGCGAGAaCG- -5'
24517 3' -48.3 NC_005264.1 + 34473 0.69 0.994104
Target:  5'- uCGGGAA--AUUCCcugAUCGCUCUgGUa -3'
miRNA:   3'- -GCCCUUucUAAGGca-UAGCGAGAaCG- -5'
24517 3' -48.3 NC_005264.1 + 50266 0.69 0.992125
Target:  5'- gCGGcGgcGAUUCCGaGUUGCUCgUGCg -3'
miRNA:   3'- -GCCcUuuCUAAGGCaUAGCGAGaACG- -5'
24517 3' -48.3 NC_005264.1 + 57167 0.7 0.988207
Target:  5'- cCGGcGGGAGAcgCCGUGUUGUUCUg-- -3'
miRNA:   3'- -GCC-CUUUCUaaGGCAUAGCGAGAacg -5'
24517 3' -48.3 NC_005264.1 + 1019 0.71 0.982923
Target:  5'- uGGGggGGcaggggccGUUCUGUAuucUCGCgguUCUUGCu -3'
miRNA:   3'- gCCCuuUC--------UAAGGCAU---AGCG---AGAACG- -5'
24517 3' -48.3 NC_005264.1 + 81942 0.71 0.978518
Target:  5'- aGGGggGcgcuuGAUgaggUCGUGUCGCUCagGCu -3'
miRNA:   3'- gCCCuuU-----CUAa---GGCAUAGCGAGaaCG- -5'
24517 3' -48.3 NC_005264.1 + 15307 1.13 0.011519
Target:  5'- gCGGGAAAGAUUCCGUAUCGCUCUUGCc -3'
miRNA:   3'- -GCCCUUUCUAAGGCAUAGCGAGAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.