miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24518 5' -54.5 NC_005264.1 + 25554 0.66 0.964978
Target:  5'- gCCCgCGUCGccGCCaACGccGCGGAAucGCAACc -3'
miRNA:   3'- -GGG-GUAGC--CGG-UGC--CGCCUUu-UGUUG- -5'
24518 5' -54.5 NC_005264.1 + 45523 0.66 0.964978
Target:  5'- aCCCGcgcacgcuucUCaGUCGCacGCGGAGAGCGGCa -3'
miRNA:   3'- gGGGU----------AGcCGGUGc-CGCCUUUUGUUG- -5'
24518 5' -54.5 NC_005264.1 + 52255 0.66 0.964978
Target:  5'- cCCCCGccuacucaccCGGCCACGGCaucu-ACAAUg -3'
miRNA:   3'- -GGGGUa---------GCCGGUGCCGccuuuUGUUG- -5'
24518 5' -54.5 NC_005264.1 + 32854 0.66 0.964651
Target:  5'- cCCCCgugcuucgucaucGUCGGucCCGCGGUGGuuGGCu-- -3'
miRNA:   3'- -GGGG-------------UAGCC--GGUGCCGCCuuUUGuug -5'
24518 5' -54.5 NC_005264.1 + 151880 0.66 0.964651
Target:  5'- cCCCCgugcuucgucaucGUCGGucCCGCGGUGGuuGGCu-- -3'
miRNA:   3'- -GGGG-------------UAGCC--GGUGCCGCCuuUUGuug -5'
24518 5' -54.5 NC_005264.1 + 5682 0.66 0.961954
Target:  5'- uUCCCAcgaguacagagcgcgCGGgCaacgccugGCGGCGGAAAACAAa -3'
miRNA:   3'- -GGGGUa--------------GCCgG--------UGCCGCCUUUUGUUg -5'
24518 5' -54.5 NC_005264.1 + 95482 0.66 0.961608
Target:  5'- aCUCGUCuuGGCUACGgaGCGGAGAGUAAUa -3'
miRNA:   3'- gGGGUAG--CCGGUGC--CGCCUUUUGUUG- -5'
24518 5' -54.5 NC_005264.1 + 25204 0.66 0.961608
Target:  5'- gCCCUguGUCuGUCgaGCGG-GGAGAGCGACa -3'
miRNA:   3'- -GGGG--UAGcCGG--UGCCgCCUUUUGUUG- -5'
24518 5' -54.5 NC_005264.1 + 69945 0.66 0.961608
Target:  5'- cUCCCGUUGGCgguuuGCGuCGGAAGACGc- -3'
miRNA:   3'- -GGGGUAGCCGg----UGCcGCCUUUUGUug -5'
24518 5' -54.5 NC_005264.1 + 66472 0.66 0.961608
Target:  5'- aCCgCcgCGGCCAgacucaaugcuUGGCGGGcugcGCGGCg -3'
miRNA:   3'- -GGgGuaGCCGGU-----------GCCGCCUuu--UGUUG- -5'
24518 5' -54.5 NC_005264.1 + 146728 0.66 0.961608
Target:  5'- gCCCCAagcuuagGGUCgaacgaggGCGGCGGAcccGGCAACa -3'
miRNA:   3'- -GGGGUag-----CCGG--------UGCCGCCUu--UUGUUG- -5'
24518 5' -54.5 NC_005264.1 + 53518 0.66 0.960554
Target:  5'- aCgCAUCGgagcgcuaacuagcGCCGCGGCuaGAGACAACa -3'
miRNA:   3'- gGgGUAGC--------------CGGUGCCGccUUUUGUUG- -5'
24518 5' -54.5 NC_005264.1 + 149636 0.66 0.958018
Target:  5'- gCCC---GGCgACGGCGGc-GGCGACg -3'
miRNA:   3'- gGGGuagCCGgUGCCGCCuuUUGUUG- -5'
24518 5' -54.5 NC_005264.1 + 122707 0.66 0.958018
Target:  5'- -gCCGucUCGGCgGCGaGacgaGGAGGACGGCg -3'
miRNA:   3'- ggGGU--AGCCGgUGC-Cg---CCUUUUGUUG- -5'
24518 5' -54.5 NC_005264.1 + 3680 0.66 0.958018
Target:  5'- -gCCGucUCGGCgGCGaGacgaGGAGGACGGCg -3'
miRNA:   3'- ggGGU--AGCCGgUGC-Cg---CCUUUUGUUG- -5'
24518 5' -54.5 NC_005264.1 + 30609 0.66 0.958018
Target:  5'- gCCC---GGCgACGGCGGc-GGCGACg -3'
miRNA:   3'- gGGGuagCCGgUGCCGCCuuUUGUUG- -5'
24518 5' -54.5 NC_005264.1 + 113245 0.66 0.958018
Target:  5'- cCCCCGUCguccuGGUCGcCGGCGGcguGCGc- -3'
miRNA:   3'- -GGGGUAG-----CCGGU-GCCGCCuuuUGUug -5'
24518 5' -54.5 NC_005264.1 + 139810 0.66 0.958018
Target:  5'- -gCCGUCGGCCGucGCGGGAcgaAACg -3'
miRNA:   3'- ggGGUAGCCGGUgcCGCCUUuugUUG- -5'
24518 5' -54.5 NC_005264.1 + 138595 0.66 0.954206
Target:  5'- aCUUCcgCGGCaGCGGUGGGGuGCAAg -3'
miRNA:   3'- -GGGGuaGCCGgUGCCGCCUUuUGUUg -5'
24518 5' -54.5 NC_005264.1 + 81503 0.66 0.954206
Target:  5'- -aCCAgauaGCC-UGGCGGGAAGCGGCu -3'
miRNA:   3'- ggGGUagc-CGGuGCCGCCUUUUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.