miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24519 3' -56.5 NC_005264.1 + 14075 1.02 0.007604
Target:  5'- cAUGCCGAGCAUCAGAGACAGGCGUGc -3'
miRNA:   3'- aUGCGGCUCGUAGUCUCUGUCCGCAC- -5'
24519 3' -56.5 NC_005264.1 + 111073 0.76 0.367824
Target:  5'- cGCGCCGGGCGauugcaucucgcucUCAGAGAUGGGCu-- -3'
miRNA:   3'- aUGCGGCUCGU--------------AGUCUCUGUCCGcac -5'
24519 3' -56.5 NC_005264.1 + 139719 0.73 0.495208
Target:  5'- --gGCCGAGCAUUAGGGACcgGGGCc-- -3'
miRNA:   3'- augCGGCUCGUAGUCUCUG--UCCGcac -5'
24519 3' -56.5 NC_005264.1 + 13324 0.72 0.534375
Target:  5'- cGCGCgGAGCAggaGGAGAgGGGCGc- -3'
miRNA:   3'- aUGCGgCUCGUag-UCUCUgUCCGCac -5'
24519 3' -56.5 NC_005264.1 + 132351 0.72 0.534375
Target:  5'- cGCGCgGAGCAggaGGAGAgGGGCGc- -3'
miRNA:   3'- aUGCGgCUCGUag-UCUCUgUCCGCac -5'
24519 3' -56.5 NC_005264.1 + 54704 0.72 0.554372
Target:  5'- gGCGCCGAGgA-CAGGGugGGaaGCGUGg -3'
miRNA:   3'- aUGCGGCUCgUaGUCUCugUC--CGCAC- -5'
24519 3' -56.5 NC_005264.1 + 28687 0.72 0.554372
Target:  5'- cGCGCCGAGCuaCAGAuucuGuuGGGCGUGg -3'
miRNA:   3'- aUGCGGCUCGuaGUCU----CugUCCGCAC- -5'
24519 3' -56.5 NC_005264.1 + 144671 0.72 0.564453
Target:  5'- uUGCGCCGAGCGUCAGccGACAaGCcUGu -3'
miRNA:   3'- -AUGCGGCUCGUAGUCu-CUGUcCGcAC- -5'
24519 3' -56.5 NC_005264.1 + 73050 0.71 0.635979
Target:  5'- aGCGCCGgcGGUAUgcggcCAGAGACGuGGCGUa -3'
miRNA:   3'- aUGCGGC--UCGUA-----GUCUCUGU-CCGCAc -5'
24519 3' -56.5 NC_005264.1 + 116414 0.71 0.635979
Target:  5'- gACGUCGAGCG-CAG-GGC-GGCGUGc -3'
miRNA:   3'- aUGCGGCUCGUaGUCuCUGuCCGCAC- -5'
24519 3' -56.5 NC_005264.1 + 151755 0.7 0.64522
Target:  5'- gACGCCGcAGCAUCGuaauuacGAGGCGGGUa-- -3'
miRNA:   3'- aUGCGGC-UCGUAGU-------CUCUGUCCGcac -5'
24519 3' -56.5 NC_005264.1 + 142978 0.7 0.656502
Target:  5'- gGCGgucucUCGGGCAU--GAGGCGGGCGUGg -3'
miRNA:   3'- aUGC-----GGCUCGUAguCUCUGUCCGCAC- -5'
24519 3' -56.5 NC_005264.1 + 77976 0.7 0.666738
Target:  5'- gGCGCCGcGCGUacCGGAG-CGGGCGa- -3'
miRNA:   3'- aUGCGGCuCGUA--GUCUCuGUCCGCac -5'
24519 3' -56.5 NC_005264.1 + 123059 0.7 0.666738
Target:  5'- cGgGCCGAuGCAUCAgGAGACgauGGGCGa- -3'
miRNA:   3'- aUgCGGCU-CGUAGU-CUCUG---UCCGCac -5'
24519 3' -56.5 NC_005264.1 + 4032 0.7 0.666738
Target:  5'- cGgGCCGAuGCAUCAgGAGACgauGGGCGa- -3'
miRNA:   3'- aUgCGGCU-CGUAGU-CUCUG---UCCGCac -5'
24519 3' -56.5 NC_005264.1 + 129517 0.7 0.697243
Target:  5'- gGCGCCGgaGGCGaCGGAaccacuGCGGGCGUGg -3'
miRNA:   3'- aUGCGGC--UCGUaGUCUc-----UGUCCGCAC- -5'
24519 3' -56.5 NC_005264.1 + 20512 0.69 0.717319
Target:  5'- cUGCGCCGAGaagcCAGGGGCAcGCGUu -3'
miRNA:   3'- -AUGCGGCUCgua-GUCUCUGUcCGCAc -5'
24519 3' -56.5 NC_005264.1 + 69609 0.69 0.727252
Target:  5'- gGCGCCGcccGGCGUgAGAacGACAGGCu-- -3'
miRNA:   3'- aUGCGGC---UCGUAgUCU--CUGUCCGcac -5'
24519 3' -56.5 NC_005264.1 + 45379 0.69 0.727252
Target:  5'- gAgGUCGAGUAuggguUCAGAGACAcGGCGa- -3'
miRNA:   3'- aUgCGGCUCGU-----AGUCUCUGU-CCGCac -5'
24519 3' -56.5 NC_005264.1 + 18147 0.69 0.737102
Target:  5'- gGCG-CGAGCGgcuaAGAGACAGGCuUGu -3'
miRNA:   3'- aUGCgGCUCGUag--UCUCUGUCCGcAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.