miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24519 3' -56.5 NC_005264.1 + 139719 0.73 0.495208
Target:  5'- --gGCCGAGCAUUAGGGACcgGGGCc-- -3'
miRNA:   3'- augCGGCUCGUAGUCUCUG--UCCGcac -5'
24519 3' -56.5 NC_005264.1 + 534 0.67 0.820507
Target:  5'- -cCGCCGAGCAcccagccaUCcggaAGAGACGGcGaCGUGg -3'
miRNA:   3'- auGCGGCUCGU--------AG----UCUCUGUC-C-GCAC- -5'
24519 3' -56.5 NC_005264.1 + 31191 0.67 0.820507
Target:  5'- gGCGgCGGGCAcCGcAGACcgAGGCGUGa -3'
miRNA:   3'- aUGCgGCUCGUaGUcUCUG--UCCGCAC- -5'
24519 3' -56.5 NC_005264.1 + 19426 0.67 0.837366
Target:  5'- gGCGCCGGGUGUggccgCGGGGcGCGGGUGg- -3'
miRNA:   3'- aUGCGGCUCGUA-----GUCUC-UGUCCGCac -5'
24519 3' -56.5 NC_005264.1 + 112568 0.67 0.837366
Target:  5'- cUACGCaCGAGCAacUCGGAaucgccgccgcGGCAGGUGc- -3'
miRNA:   3'- -AUGCG-GCUCGU--AGUCU-----------CUGUCCGCac -5'
24519 3' -56.5 NC_005264.1 + 45226 0.67 0.845518
Target:  5'- aACGCCGAGCG-CAGcguAGGCAuGGCc-- -3'
miRNA:   3'- aUGCGGCUCGUaGUC---UCUGU-CCGcac -5'
24519 3' -56.5 NC_005264.1 + 147680 0.67 0.853474
Target:  5'- gAUGUCGcucGGuCGUcCAGAGACGGGCGg- -3'
miRNA:   3'- aUGCGGC---UC-GUA-GUCUCUGUCCGCac -5'
24519 3' -56.5 NC_005264.1 + 154480 0.66 0.868775
Target:  5'- gGCGCCGguaAGCAUCAGcGACGGuCGc- -3'
miRNA:   3'- aUGCGGC---UCGUAGUCuCUGUCcGCac -5'
24519 3' -56.5 NC_005264.1 + 60285 0.66 0.88322
Target:  5'- cGCGUCGGGCAugacguacUCGGAuuCGGGCGc- -3'
miRNA:   3'- aUGCGGCUCGU--------AGUCUcuGUCCGCac -5'
24519 3' -56.5 NC_005264.1 + 136453 0.67 0.811815
Target:  5'- gGCGCUGAggccGCGcUCAGAGAC-GGCGc- -3'
miRNA:   3'- aUGCGGCU----CGU-AGUCUCUGuCCGCac -5'
24519 3' -56.5 NC_005264.1 + 150486 0.68 0.802959
Target:  5'- gACGa-GAGCGUCGccGAUGGGCGUGg -3'
miRNA:   3'- aUGCggCUCGUAGUcuCUGUCCGCAC- -5'
24519 3' -56.5 NC_005264.1 + 20351 0.69 0.746861
Target:  5'- cGCGCCGugccAGCGUCGuGGGAgAGGUGa- -3'
miRNA:   3'- aUGCGGC----UCGUAGU-CUCUgUCCGCac -5'
24519 3' -56.5 NC_005264.1 + 132351 0.72 0.534375
Target:  5'- cGCGCgGAGCAggaGGAGAgGGGCGc- -3'
miRNA:   3'- aUGCGgCUCGUag-UCUCUgUCCGCac -5'
24519 3' -56.5 NC_005264.1 + 28687 0.72 0.554372
Target:  5'- cGCGCCGAGCuaCAGAuucuGuuGGGCGUGg -3'
miRNA:   3'- aUGCGGCUCGuaGUCU----CugUCCGCAC- -5'
24519 3' -56.5 NC_005264.1 + 77976 0.7 0.666738
Target:  5'- gGCGCCGcGCGUacCGGAG-CGGGCGa- -3'
miRNA:   3'- aUGCGGCuCGUA--GUCUCuGUCCGCac -5'
24519 3' -56.5 NC_005264.1 + 123059 0.7 0.666738
Target:  5'- cGgGCCGAuGCAUCAgGAGACgauGGGCGa- -3'
miRNA:   3'- aUgCGGCU-CGUAGU-CUCUG---UCCGCac -5'
24519 3' -56.5 NC_005264.1 + 20512 0.69 0.717319
Target:  5'- cUGCGCCGAGaagcCAGGGGCAcGCGUu -3'
miRNA:   3'- -AUGCGGCUCgua-GUCUCUGUcCGCAc -5'
24519 3' -56.5 NC_005264.1 + 45379 0.69 0.727252
Target:  5'- gAgGUCGAGUAuggguUCAGAGACAcGGCGa- -3'
miRNA:   3'- aUgCGGCUCGU-----AGUCUCUGU-CCGCac -5'
24519 3' -56.5 NC_005264.1 + 69609 0.69 0.727252
Target:  5'- gGCGCCGcccGGCGUgAGAacGACAGGCu-- -3'
miRNA:   3'- aUGCGGC---UCGUAgUCU--CUGUCCGcac -5'
24519 3' -56.5 NC_005264.1 + 18147 0.69 0.737102
Target:  5'- gGCG-CGAGCGgcuaAGAGACAGGCuUGu -3'
miRNA:   3'- aUGCgGCUCGUag--UCUCUGUCCGcAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.