miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24526 3' -63.4 NC_005264.1 + 40932 0.7 0.394559
Target:  5'- cCCCGCCGCgCCGCgccccGGUCgaucgCAGCCg -3'
miRNA:   3'- uGGGCGGUG-GGCGaa---CCAGg----GUCGGg -5'
24526 3' -63.4 NC_005264.1 + 124498 0.7 0.394559
Target:  5'- cCCCGCCGCCCaGCaucacGG-CCagGGCCCg -3'
miRNA:   3'- uGGGCGGUGGG-CGaa---CCaGGg-UCGGG- -5'
24526 3' -63.4 NC_005264.1 + 19485 0.7 0.394559
Target:  5'- uGCUgaCGCgCACCUGCgaGGUUCCAGCUg -3'
miRNA:   3'- -UGG--GCG-GUGGGCGaaCCAGGGUCGGg -5'
24526 3' -63.4 NC_005264.1 + 159959 0.7 0.394559
Target:  5'- cCCCGCCGCgCCGCgccccGGUCgaucgCAGCCg -3'
miRNA:   3'- uGGGCGGUG-GGCGaa---CCAGg----GUCGGg -5'
24526 3' -63.4 NC_005264.1 + 154358 0.69 0.402623
Target:  5'- gGCCCaCuCugCUGCUUGGggaCCCAGCUg -3'
miRNA:   3'- -UGGGcG-GugGGCGAACCa--GGGUCGGg -5'
24526 3' -63.4 NC_005264.1 + 42911 0.69 0.402623
Target:  5'- cCCCGCgGCCCGCgacacgGGgccguacaCCCAGUCg -3'
miRNA:   3'- uGGGCGgUGGGCGaa----CCa-------GGGUCGGg -5'
24526 3' -63.4 NC_005264.1 + 42845 0.69 0.410791
Target:  5'- cACCUGCCGCCCcagggGCUUccucuaaGUCCUcgAGCCCc -3'
miRNA:   3'- -UGGGCGGUGGG-----CGAAc------CAGGG--UCGGG- -5'
24526 3' -63.4 NC_005264.1 + 161871 0.69 0.410791
Target:  5'- cACCUGCCGCCCcagggGCUUccucuaaGUCCUcgAGCCCc -3'
miRNA:   3'- -UGGGCGGUGGG-----CGAAc------CAGGG--UCGGG- -5'
24526 3' -63.4 NC_005264.1 + 97963 0.69 0.419062
Target:  5'- cUCCGCCGCCuUGCg-GGcaaucUCCCAGCCg -3'
miRNA:   3'- uGGGCGGUGG-GCGaaCC-----AGGGUCGGg -5'
24526 3' -63.4 NC_005264.1 + 30860 0.69 0.427433
Target:  5'- -aCCGCCACCgGCcUGucGUCgCgAGCCCa -3'
miRNA:   3'- ugGGCGGUGGgCGaAC--CAG-GgUCGGG- -5'
24526 3' -63.4 NC_005264.1 + 41329 0.69 0.430809
Target:  5'- gGCCCGCCgaccaucgucgaagcAgCCGCgaaGG-CCCAGCuCCg -3'
miRNA:   3'- -UGGGCGG---------------UgGGCGaa-CCaGGGUCG-GG- -5'
24526 3' -63.4 NC_005264.1 + 160356 0.69 0.430809
Target:  5'- gGCCCGCCgaccaucgucgaagcAgCCGCgaaGG-CCCAGCuCCg -3'
miRNA:   3'- -UGGGCGG---------------UgGGCGaa-CCaGGGUCG-GG- -5'
24526 3' -63.4 NC_005264.1 + 119617 0.69 0.433351
Target:  5'- cGCCCGCCAgcCCCGCcguagCCCcccccccccccgccGGCCCg -3'
miRNA:   3'- -UGGGCGGU--GGGCGaaccaGGG--------------UCGGG- -5'
24526 3' -63.4 NC_005264.1 + 590 0.69 0.433351
Target:  5'- cGCCCGCCAgcCCCGCcguagCCCcccccccccccgccGGCCCg -3'
miRNA:   3'- -UGGGCGGU--GGGCGaaccaGGG--------------UCGGG- -5'
24526 3' -63.4 NC_005264.1 + 37866 0.69 0.444467
Target:  5'- uGCgCCGCUGCCCuGCgcgaggGGUUCCgAGCCUu -3'
miRNA:   3'- -UG-GGCGGUGGG-CGaa----CCAGGG-UCGGG- -5'
24526 3' -63.4 NC_005264.1 + 156892 0.69 0.444467
Target:  5'- uGCgCCGCUGCCCuGCgcgaggGGUUCCgAGCCUu -3'
miRNA:   3'- -UG-GGCGGUGGG-CGaa----CCAGGG-UCGGG- -5'
24526 3' -63.4 NC_005264.1 + 67489 0.69 0.444467
Target:  5'- cACgCGCCGCCCGUc-GGcCCCAuuGCCUc -3'
miRNA:   3'- -UGgGCGGUGGGCGaaCCaGGGU--CGGG- -5'
24526 3' -63.4 NC_005264.1 + 40331 0.68 0.453125
Target:  5'- cCCCGCCGCgUGCggcGGcaagCCCAucGCCCc -3'
miRNA:   3'- uGGGCGGUGgGCGaa-CCa---GGGU--CGGG- -5'
24526 3' -63.4 NC_005264.1 + 140315 0.68 0.453125
Target:  5'- cCCCGCCcagccaugcauuACCUGCggGGgCCCAgagauGCCCg -3'
miRNA:   3'- uGGGCGG------------UGGGCGaaCCaGGGU-----CGGG- -5'
24526 3' -63.4 NC_005264.1 + 159358 0.68 0.453125
Target:  5'- cCCCGCCGCgUGCggcGGcaagCCCAucGCCCc -3'
miRNA:   3'- uGGGCGGUGgGCGaa-CCa---GGGU--CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.