miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24526 3' -63.4 NC_005264.1 + 590 0.69 0.433351
Target:  5'- cGCCCGCCAgcCCCGCcguagCCCcccccccccccgccGGCCCg -3'
miRNA:   3'- -UGGGCGGU--GGGCGaaccaGGG--------------UCGGG- -5'
24526 3' -63.4 NC_005264.1 + 2384 0.71 0.326841
Target:  5'- -gCCGUCGCCCGCa-GGagCCCGGCgCCg -3'
miRNA:   3'- ugGGCGGUGGGCGaaCCa-GGGUCG-GG- -5'
24526 3' -63.4 NC_005264.1 + 2722 0.67 0.525408
Target:  5'- ---gGCCGCCCGC--GG-CCgGGCCCg -3'
miRNA:   3'- ugggCGGUGGGCGaaCCaGGgUCGGG- -5'
24526 3' -63.4 NC_005264.1 + 3089 0.66 0.591967
Target:  5'- -gCgGCCgaggACCCGUUcgGGcgauUCCCGGCCCc -3'
miRNA:   3'- ugGgCGG----UGGGCGAa-CC----AGGGUCGGG- -5'
24526 3' -63.4 NC_005264.1 + 3451 0.71 0.326841
Target:  5'- gUCCGCCGCCCGU--GGcgCCCGGUgCCg -3'
miRNA:   3'- uGGGCGGUGGGCGaaCCa-GGGUCG-GG- -5'
24526 3' -63.4 NC_005264.1 + 5471 0.7 0.394559
Target:  5'- cCCCGCCGCCCaGCaucacGG-CCagGGCCCg -3'
miRNA:   3'- uGGGCGGUGGG-CGaa---CCaGGg-UCGGG- -5'
24526 3' -63.4 NC_005264.1 + 5836 0.67 0.563173
Target:  5'- -gCCGCCACUCGCcUGG-CCgCGguuaucGCCCu -3'
miRNA:   3'- ugGGCGGUGGGCGaACCaGG-GU------CGGG- -5'
24526 3' -63.4 NC_005264.1 + 6889 0.68 0.470712
Target:  5'- gUCCGCgAgCCGCgcaGUCCCAGCgCg -3'
miRNA:   3'- uGGGCGgUgGGCGaacCAGGGUCGgG- -5'
24526 3' -63.4 NC_005264.1 + 7651 0.67 0.553654
Target:  5'- aACgCCGCCugCCgGCUcGGagggCUCGGCCUc -3'
miRNA:   3'- -UG-GGCGGugGG-CGAaCCa---GGGUCGGG- -5'
24526 3' -63.4 NC_005264.1 + 10161 1.1 0.000618
Target:  5'- uACCCGCCACCCGCUUGGUCCCAGCCCu -3'
miRNA:   3'- -UGGGCGGUGGGCGAACCAGGGUCGGG- -5'
24526 3' -63.4 NC_005264.1 + 12422 0.73 0.249974
Target:  5'- gGCCCGCUACgUGCUUggaggcgcggugcGGUCUaaaGGCCCg -3'
miRNA:   3'- -UGGGCGGUGgGCGAA-------------CCAGGg--UCGGG- -5'
24526 3' -63.4 NC_005264.1 + 16931 0.76 0.168233
Target:  5'- gACCCGCCGCCggaGCU--GUUCCAGCUCg -3'
miRNA:   3'- -UGGGCGGUGGg--CGAacCAGGGUCGGG- -5'
24526 3' -63.4 NC_005264.1 + 19485 0.7 0.394559
Target:  5'- uGCUgaCGCgCACCUGCgaGGUUCCAGCUg -3'
miRNA:   3'- -UGG--GCG-GUGGGCGaaCCAGGGUCGGg -5'
24526 3' -63.4 NC_005264.1 + 30206 0.67 0.529144
Target:  5'- uGCCCGCguCCCGaccgcgaucgccGGUCCCGucuucguuccGCCCu -3'
miRNA:   3'- -UGGGCGguGGGCgaa---------CCAGGGU----------CGGG- -5'
24526 3' -63.4 NC_005264.1 + 30860 0.69 0.427433
Target:  5'- -aCCGCCACCgGCcUGucGUCgCgAGCCCa -3'
miRNA:   3'- ugGGCGGUGGgCGaAC--CAG-GgUCGGG- -5'
24526 3' -63.4 NC_005264.1 + 33311 0.68 0.470712
Target:  5'- aGCCCa-CGCCCGCagUGGUUCCGucGCCUc -3'
miRNA:   3'- -UGGGcgGUGGGCGa-ACCAGGGU--CGGG- -5'
24526 3' -63.4 NC_005264.1 + 33594 0.7 0.371001
Target:  5'- cACCCGCgGCgCGUUUGGaCCCuaccuGCUCg -3'
miRNA:   3'- -UGGGCGgUGgGCGAACCaGGGu----CGGG- -5'
24526 3' -63.4 NC_005264.1 + 37866 0.69 0.444467
Target:  5'- uGCgCCGCUGCCCuGCgcgaggGGUUCCgAGCCUu -3'
miRNA:   3'- -UG-GGCGGUGGG-CGaa----CCAGGG-UCGGG- -5'
24526 3' -63.4 NC_005264.1 + 38509 0.67 0.506882
Target:  5'- uCCCGCCagucGCCCGCcccacgGGUCagCCGccGCCCc -3'
miRNA:   3'- uGGGCGG----UGGGCGaa----CCAG--GGU--CGGG- -5'
24526 3' -63.4 NC_005264.1 + 38678 0.68 0.494991
Target:  5'- gGCgaCGCC-CCCGUcguaauuuccuacgUaGGUCCCAGCUCg -3'
miRNA:   3'- -UGg-GCGGuGGGCG--------------AaCCAGGGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.