miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24526 3' -63.4 NC_005264.1 + 33311 0.68 0.470712
Target:  5'- aGCCCa-CGCCCGCagUGGUUCCGucGCCUc -3'
miRNA:   3'- -UGGGcgGUGGGCGa-ACCAGGGU--CGGG- -5'
24526 3' -63.4 NC_005264.1 + 161871 0.69 0.410791
Target:  5'- cACCUGCCGCCCcagggGCUUccucuaaGUCCUcgAGCCCc -3'
miRNA:   3'- -UGGGCGGUGGG-----CGAAc------CAGGG--UCGGG- -5'
24526 3' -63.4 NC_005264.1 + 30860 0.69 0.427433
Target:  5'- -aCCGCCACCgGCcUGucGUCgCgAGCCCa -3'
miRNA:   3'- ugGGCGGUGGgCGaAC--CAG-GgUCGGG- -5'
24526 3' -63.4 NC_005264.1 + 160356 0.69 0.430809
Target:  5'- gGCCCGCCgaccaucgucgaagcAgCCGCgaaGG-CCCAGCuCCg -3'
miRNA:   3'- -UGGGCGG---------------UgGGCGaa-CCaGGGUCG-GG- -5'
24526 3' -63.4 NC_005264.1 + 119617 0.69 0.433351
Target:  5'- cGCCCGCCAgcCCCGCcguagCCCcccccccccccgccGGCCCg -3'
miRNA:   3'- -UGGGCGGU--GGGCGaaccaGGG--------------UCGGG- -5'
24526 3' -63.4 NC_005264.1 + 156892 0.69 0.444467
Target:  5'- uGCgCCGCUGCCCuGCgcgaggGGUUCCgAGCCUu -3'
miRNA:   3'- -UG-GGCGGUGGG-CGaa----CCAGGG-UCGGG- -5'
24526 3' -63.4 NC_005264.1 + 159358 0.68 0.453125
Target:  5'- cCCCGCCGCgUGCggcGGcaagCCCAucGCCCc -3'
miRNA:   3'- uGGGCGGUGgGCGaa-CCa---GGGU--CGGG- -5'
24526 3' -63.4 NC_005264.1 + 58317 0.68 0.461875
Target:  5'- cGCCgGCUGCCCGCgaagGGgaacaaauUCCCcucGCCCc -3'
miRNA:   3'- -UGGgCGGUGGGCGaa--CC--------AGGGu--CGGG- -5'
24526 3' -63.4 NC_005264.1 + 6889 0.68 0.470712
Target:  5'- gUCCGCgAgCCGCgcaGUCCCAGCgCg -3'
miRNA:   3'- uGGGCGgUgGGCGaacCAGGGUCGgG- -5'
24526 3' -63.4 NC_005264.1 + 159959 0.7 0.394559
Target:  5'- cCCCGCCGCgCCGCgccccGGUCgaucgCAGCCg -3'
miRNA:   3'- uGGGCGGUG-GGCGaa---CCAGg----GUCGGg -5'
24526 3' -63.4 NC_005264.1 + 124498 0.7 0.394559
Target:  5'- cCCCGCCGCCCaGCaucacGG-CCagGGCCCg -3'
miRNA:   3'- uGGGCGGUGGG-CGaa---CCaGGg-UCGGG- -5'
24526 3' -63.4 NC_005264.1 + 19485 0.7 0.394559
Target:  5'- uGCUgaCGCgCACCUGCgaGGUUCCAGCUg -3'
miRNA:   3'- -UGG--GCG-GUGGGCGaaCCAGGGUCGGg -5'
24526 3' -63.4 NC_005264.1 + 114435 0.74 0.218233
Target:  5'- uGCCC-CCACCCGCUccUGG-CCgCcGCCCg -3'
miRNA:   3'- -UGGGcGGUGGGCGA--ACCaGG-GuCGGG- -5'
24526 3' -63.4 NC_005264.1 + 75185 0.73 0.239355
Target:  5'- uGCCCG-UugCCGCcaGGUCCCGcGCCCc -3'
miRNA:   3'- -UGGGCgGugGGCGaaCCAGGGU-CGGG- -5'
24526 3' -63.4 NC_005264.1 + 131449 0.73 0.249974
Target:  5'- gGCCCGCUACgUGCUUggaggcgcggugcGGUCUaaaGGCCCg -3'
miRNA:   3'- -UGGGCGGUGgGCGAA-------------CCAGGg--UCGGG- -5'
24526 3' -63.4 NC_005264.1 + 3451 0.71 0.326841
Target:  5'- gUCCGCCGCCCGU--GGcgCCCGGUgCCg -3'
miRNA:   3'- uGGGCGGUGGGCGaaCCa-GGGUCG-GG- -5'
24526 3' -63.4 NC_005264.1 + 121411 0.71 0.326841
Target:  5'- -gCCGUCGCCCGCa-GGagCCCGGCgCCg -3'
miRNA:   3'- ugGGCGGUGGGCGaaCCa-GGGUCG-GG- -5'
24526 3' -63.4 NC_005264.1 + 152621 0.7 0.371001
Target:  5'- cACCCGCgGCgCGUUUGGaCCCuaccuGCUCg -3'
miRNA:   3'- -UGGGCGgUGgGCGAACCaGGGu----CGGG- -5'
24526 3' -63.4 NC_005264.1 + 113794 0.7 0.376412
Target:  5'- -aCCGCCACCCGCUgcccccagggaaagUGGUgguaauucacaaCCCAGUa- -3'
miRNA:   3'- ugGGCGGUGGGCGA--------------ACCA------------GGGUCGgg -5'
24526 3' -63.4 NC_005264.1 + 52709 0.7 0.378746
Target:  5'- cGCCCGCC-CCCaaaagcGCggcGGcUCUCGGCCCc -3'
miRNA:   3'- -UGGGCGGuGGG------CGaa-CC-AGGGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.