Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24526 | 5' | -48 | NC_005264.1 | + | 129222 | 1.08 | 0.017788 |
Target: 5'- aGAGAAACAACACCAAACGAGCAGGUAg -3' miRNA: 3'- -CUCUUUGUUGUGGUUUGCUCGUCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 10195 | 1.08 | 0.017788 |
Target: 5'- aGAGAAACAACACCAAACGAGCAGGUAg -3' miRNA: 3'- -CUCUUUGUUGUGGUUUGCUCGUCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 104325 | 0.76 | 0.836557 |
Target: 5'- uGAGgcGCGACGCCGcuuACGAGgAGGUGc -3' miRNA: 3'- -CUCuuUGUUGUGGUu--UGCUCgUCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 106304 | 0.75 | 0.862 |
Target: 5'- gGAGAgcGACAGCugC-GGCGGGCAGGg- -3' miRNA: 3'- -CUCU--UUGUUGugGuUUGCUCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 52858 | 0.72 | 0.945873 |
Target: 5'- ---cGGCAAC-CCGAGCGGGCAGGc- -3' miRNA: 3'- cucuUUGUUGuGGUUUGCUCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 63804 | 0.72 | 0.945873 |
Target: 5'- gGGGAGGCcccgcuuuGCGCUAGAuCGAGUAGGUAg -3' miRNA: 3'- -CUCUUUGu-------UGUGGUUU-GCUCGUCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 51515 | 0.72 | 0.950439 |
Target: 5'- cAGGGugGACugCu--CGAGCAGGUGc -3' miRNA: 3'- cUCUUugUUGugGuuuGCUCGUCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 29134 | 0.72 | 0.952191 |
Target: 5'- cAGAGGCAGCACCAgugcgcGgcggcaaggaccgcgGCGAGCAGGc- -3' miRNA: 3'- cUCUUUGUUGUGGU------U---------------UGCUCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 76443 | 0.72 | 0.95474 |
Target: 5'- uGAGAAACAACACCGucCGccGGCAGa-- -3' miRNA: 3'- -CUCUUUGUUGUGGUuuGC--UCGUCcau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 111100 | 0.72 | 0.962568 |
Target: 5'- aGAGAugGGCuACACCcucgAGAUGGGCGGGUGc -3' miRNA: 3'- -CUCU--UUGuUGUGG----UUUGCUCGUCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 74825 | 0.71 | 0.972461 |
Target: 5'- cGAGGAACGuggGCACCAG--GGGCAGGc- -3' miRNA: 3'- -CUCUUUGU---UGUGGUUugCUCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 68733 | 0.71 | 0.975293 |
Target: 5'- ---cAGCGGCGCCAGAaccuCGGGCGGGUu -3' miRNA: 3'- cucuUUGUUGUGGUUU----GCUCGUCCAu -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 154522 | 0.7 | 0.980311 |
Target: 5'- gGGGAcgacGGCGACGCC--GCGGcGCAGGUGc -3' miRNA: 3'- -CUCU----UUGUUGUGGuuUGCU-CGUCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 21532 | 0.7 | 0.980311 |
Target: 5'- -uGGGACAGCACCGGGCGAccGUuuauGGUGu -3' miRNA: 3'- cuCUUUGUUGUGGUUUGCU--CGu---CCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 115905 | 0.7 | 0.980311 |
Target: 5'- --uGAGCAACGCCAaggaGACGAGCGGcGa- -3' miRNA: 3'- cucUUUGUUGUGGU----UUGCUCGUC-Cau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 35495 | 0.7 | 0.980311 |
Target: 5'- gGGGAcgacGGCGACGCC--GCGGcGCAGGUGc -3' miRNA: 3'- -CUCU----UUGUUGUGGuuUGCU-CGUCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 149798 | 0.7 | 0.982515 |
Target: 5'- --cAAACGACAgCAGACGAGCGGccGUAg -3' miRNA: 3'- cucUUUGUUGUgGUUUGCUCGUC--CAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 48066 | 0.7 | 0.984527 |
Target: 5'- cAGGGACAucgGCCGAGCGGcGCAGGg- -3' miRNA: 3'- cUCUUUGUug-UGGUUUGCU-CGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 67280 | 0.7 | 0.986358 |
Target: 5'- --uAGACGACG-CGAAUGGGCGGGUAu -3' miRNA: 3'- cucUUUGUUGUgGUUUGCUCGUCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 22875 | 0.7 | 0.988019 |
Target: 5'- cGAGGGuucGCAGCAUCuc-CGGGCAGGg- -3' miRNA: 3'- -CUCUU---UGUUGUGGuuuGCUCGUCCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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