Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24526 | 5' | -48 | NC_005264.1 | + | 1449 | 0.66 | 0.999194 |
Target: 5'- cGGGAGcCAGCACCGGccaucGCcGGCGGGg- -3' miRNA: 3'- -CUCUUuGUUGUGGUU-----UGcUCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 5264 | 0.68 | 0.995702 |
Target: 5'- cGGGAGGCGagucGCgGCCGGACG-GCGGGg- -3' miRNA: 3'- -CUCUUUGU----UG-UGGUUUGCuCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 5997 | 0.67 | 0.998784 |
Target: 5'- gGGGAGucguCGGC-CCcGACGGGCGGGg- -3' miRNA: 3'- -CUCUUu---GUUGuGGuUUGCUCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 10195 | 1.08 | 0.017788 |
Target: 5'- aGAGAAACAACACCAAACGAGCAGGUAg -3' miRNA: 3'- -CUCUUUGUUGUGGUUUGCUCGUCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 13345 | 0.66 | 0.999194 |
Target: 5'- aGGGAACGGCGCgAAuCGAGCGGc-- -3' miRNA: 3'- cUCUUUGUUGUGgUUuGCUCGUCcau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 19416 | 0.68 | 0.994461 |
Target: 5'- gGGGAGGCGagGCGCCGGguguggccgcggggcGCGGGUGGGUu -3' miRNA: 3'- -CUCUUUGU--UGUGGUU---------------UGCUCGUCCAu -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 19448 | 0.66 | 0.998987 |
Target: 5'- -cGAGGCGcucaucgGCACCAGuauauGCGcGCGGGUAg -3' miRNA: 3'- cuCUUUGU-------UGUGGUU-----UGCuCGUCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 21532 | 0.7 | 0.980311 |
Target: 5'- -uGGGACAGCACCGGGCGAccGUuuauGGUGu -3' miRNA: 3'- cuCUUUGUUGUGGUUUGCU--CGu---CCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 22875 | 0.7 | 0.988019 |
Target: 5'- cGAGGGuucGCAGCAUCuc-CGGGCAGGg- -3' miRNA: 3'- -CUCUU---UGUUGUGGuuuGCUCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 29134 | 0.72 | 0.952191 |
Target: 5'- cAGAGGCAGCACCAgugcgcGgcggcaaggaccgcgGCGAGCAGGc- -3' miRNA: 3'- cUCUUUGUUGUGGU------U---------------UGCUCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 33647 | 0.68 | 0.995702 |
Target: 5'- cGAGGGcUGGgACCAAGCGgguGGCGGGUAu -3' miRNA: 3'- -CUCUUuGUUgUGGUUUGC---UCGUCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 35495 | 0.7 | 0.980311 |
Target: 5'- gGGGAcgacGGCGACGCC--GCGGcGCAGGUGc -3' miRNA: 3'- -CUCU----UUGUUGUGGuuUGCU-CGUCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 36014 | 0.67 | 0.998208 |
Target: 5'- -cGAGGCGuugccCGCCAAuacucugaGCGAGCGGGa- -3' miRNA: 3'- cuCUUUGUu----GUGGUU--------UGCUCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 36248 | 0.68 | 0.995702 |
Target: 5'- -cGGAGCcGCACguGGCGgaAGCGGGUAg -3' miRNA: 3'- cuCUUUGuUGUGguUUGC--UCGUCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 39127 | 0.68 | 0.996354 |
Target: 5'- uGGAcGCGGCGCCAcucgcccCGAcGCAGGUAu -3' miRNA: 3'- cUCUuUGUUGUGGUuu-----GCU-CGUCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 44124 | 0.69 | 0.989518 |
Target: 5'- -cGGGAUAGCGgCGAuuACGAGCGGGa- -3' miRNA: 3'- cuCUUUGUUGUgGUU--UGCUCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 48066 | 0.7 | 0.984527 |
Target: 5'- cAGGGACAucgGCCGAGCGGcGCAGGg- -3' miRNA: 3'- cUCUUUGUug-UGGUUUGCU-CGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 51515 | 0.72 | 0.950439 |
Target: 5'- cAGGGugGACugCu--CGAGCAGGUGc -3' miRNA: 3'- cUCUUugUUGugGuuuGCUCGUCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 52684 | 0.68 | 0.996354 |
Target: 5'- aGAGAuuCGugGCCGAuacCGAGUGGGa- -3' miRNA: 3'- -CUCUuuGUugUGGUUu--GCUCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 52858 | 0.72 | 0.945873 |
Target: 5'- ---cGGCAAC-CCGAGCGGGCAGGc- -3' miRNA: 3'- cucuUUGUUGuGGUUUGCUCGUCCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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