miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24527 5' -49.7 NC_005264.1 + 128614 1.11 0.008786
Target:  5'- uCGUCUAUCGCUCAAAGUACAGGCGACg -3'
miRNA:   3'- -GCAGAUAGCGAGUUUCAUGUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 9587 1.11 0.008786
Target:  5'- uCGUCUAUCGCUCAAAGUACAGGCGACg -3'
miRNA:   3'- -GCAGAUAGCGAGUUUCAUGUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 139721 0.82 0.454816
Target:  5'- aCGUCUAucucUCGCUCGuuGggagGCGGGCGGCa -3'
miRNA:   3'- -GCAGAU----AGCGAGUuuCa---UGUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 28136 0.77 0.734575
Target:  5'- uCGUCUG-CGCUUugauucgccAGUGCGGGCGGCu -3'
miRNA:   3'- -GCAGAUaGCGAGuu-------UCAUGUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 123846 0.74 0.838673
Target:  5'- cCGUC-GUCGCUCugcAGGUGuuccgcCAGGCGGCa -3'
miRNA:   3'- -GCAGaUAGCGAGu--UUCAU------GUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 4820 0.74 0.838673
Target:  5'- cCGUC-GUCGCUCugcAGGUGuuccgcCAGGCGGCa -3'
miRNA:   3'- -GCAGaUAGCGAGu--UUCAU------GUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 48701 0.72 0.924444
Target:  5'- uCGUCgcgGUCGCUCGcGGgagAUgAGGCGGCc -3'
miRNA:   3'- -GCAGa--UAGCGAGUuUCa--UG-UCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 17249 0.71 0.949488
Target:  5'- uCGUCgGUCGCuUCAAAG-ACggucgucaacggAGGCGACg -3'
miRNA:   3'- -GCAGaUAGCG-AGUUUCaUG------------UCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 34764 0.71 0.953732
Target:  5'- cCG-CUGUCGCUacaCGAAGaugagccgcucaUGCGGGCGGCc -3'
miRNA:   3'- -GCaGAUAGCGA---GUUUC------------AUGUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 50026 0.7 0.961484
Target:  5'- uCGUag--CGCUCAGAGaACAGGCGuuuCa -3'
miRNA:   3'- -GCAgauaGCGAGUUUCaUGUCCGCu--G- -5'
24527 5' -49.7 NC_005264.1 + 80533 0.7 0.971345
Target:  5'- aCGUC-GUCGCcccCAAacAGUACGGcGCGGCa -3'
miRNA:   3'- -GCAGaUAGCGa--GUU--UCAUGUC-CGCUG- -5'
24527 5' -49.7 NC_005264.1 + 126819 0.7 0.971345
Target:  5'- -----cUCGCUCAGAGUAUuGGCGGg -3'
miRNA:   3'- gcagauAGCGAGUUUCAUGuCCGCUg -5'
24527 5' -49.7 NC_005264.1 + 48383 0.7 0.974187
Target:  5'- gCGUCgaggCGCUCGAcGUucguCgAGGCGACg -3'
miRNA:   3'- -GCAGaua-GCGAGUUuCAu---G-UCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 74642 0.69 0.981481
Target:  5'- cCGUCag-CGCgaaccCAGGGUGCAGGCcGCu -3'
miRNA:   3'- -GCAGauaGCGa----GUUUCAUGUCCGcUG- -5'
24527 5' -49.7 NC_005264.1 + 126929 0.69 0.98353
Target:  5'- gGUCUccUCGC-CGGAGUACugGGGgGACg -3'
miRNA:   3'- gCAGAu-AGCGaGUUUCAUG--UCCgCUG- -5'
24527 5' -49.7 NC_005264.1 + 117011 0.69 0.98353
Target:  5'- gGUCUG-CGCggcgCAugacGAGUACAGcGCGAUc -3'
miRNA:   3'- gCAGAUaGCGa---GU----UUCAUGUC-CGCUG- -5'
24527 5' -49.7 NC_005264.1 + 162247 0.69 0.98353
Target:  5'- aGUCgccUCGCUgcCGGAGU-CGGGCGAg -3'
miRNA:   3'- gCAGau-AGCGA--GUUUCAuGUCCGCUg -5'
24527 5' -49.7 NC_005264.1 + 6459 0.69 0.98353
Target:  5'- uCGUCg--CGCUCAGGGU-CAcGGUGAa -3'
miRNA:   3'- -GCAGauaGCGAGUUUCAuGU-CCGCUg -5'
24527 5' -49.7 NC_005264.1 + 7903 0.69 0.98353
Target:  5'- gGUCUccUCGC-CGGAGUACugGGGgGACg -3'
miRNA:   3'- gCAGAu-AGCGaGUUUCAUG--UCCgCUG- -5'
24527 5' -49.7 NC_005264.1 + 124461 0.69 0.985403
Target:  5'- uGUCUuUCGagagCGAGGUGCGGaaGCGGCg -3'
miRNA:   3'- gCAGAuAGCga--GUUUCAUGUC--CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.