miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24527 5' -49.7 NC_005264.1 + 128614 1.11 0.008786
Target:  5'- uCGUCUAUCGCUCAAAGUACAGGCGACg -3'
miRNA:   3'- -GCAGAUAGCGAGUUUCAUGUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 9276 0.67 0.993458
Target:  5'- gCGUUcuUCGUaguccaggCAGGGUGgAGGCGACg -3'
miRNA:   3'- -GCAGauAGCGa-------GUUUCAUgUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 8646 0.67 0.993458
Target:  5'- aCGUCUAcguuUCGCgCGAAGUAuuCGGGCa-- -3'
miRNA:   3'- -GCAGAU----AGCGaGUUUCAU--GUCCGcug -5'
24527 5' -49.7 NC_005264.1 + 97129 0.67 0.994357
Target:  5'- -cUCUGa-GCUCAAGGgcUACAGGCGGu -3'
miRNA:   3'- gcAGAUagCGAGUUUC--AUGUCCGCUg -5'
24527 5' -49.7 NC_005264.1 + 57969 0.67 0.995154
Target:  5'- uGcCUAUCGUcaUCGGAGUccccGCGcGGCGGCc -3'
miRNA:   3'- gCaGAUAGCG--AGUUUCA----UGU-CCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 13891 0.67 0.995857
Target:  5'- gCGUC-GUCGC-C----UGCAGGCGACg -3'
miRNA:   3'- -GCAGaUAGCGaGuuucAUGUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 42003 0.67 0.995857
Target:  5'- uGUCUucgUGCUCGucGgcCAcGGCGGCa -3'
miRNA:   3'- gCAGAua-GCGAGUuuCauGU-CCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 9545 0.67 0.996474
Target:  5'- -cUUUGUCGCUCGcAGccGguGGCGGCu -3'
miRNA:   3'- gcAGAUAGCGAGUuUCa-UguCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 30100 0.66 0.998238
Target:  5'- ----aAUCGCgagUCGAGaUGCGGGCGGCg -3'
miRNA:   3'- gcagaUAGCG---AGUUUcAUGUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 30478 0.68 0.991317
Target:  5'- aGUC--UCGCUCGAGcugacGUACAGGUaGCg -3'
miRNA:   3'- gCAGauAGCGAGUUU-----CAUGUCCGcUG- -5'
24527 5' -49.7 NC_005264.1 + 147674 0.68 0.988657
Target:  5'- aCGUUcgaUGUCGCUCGgucguccaGAG-ACGGGCGGu -3'
miRNA:   3'- -GCAG---AUAGCGAGU--------UUCaUGUCCGCUg -5'
24527 5' -49.7 NC_005264.1 + 48766 0.68 0.988657
Target:  5'- --cCUGUCGUUCGacauaGAGUGCAaGGcCGGCg -3'
miRNA:   3'- gcaGAUAGCGAGU-----UUCAUGU-CC-GCUG- -5'
24527 5' -49.7 NC_005264.1 + 123846 0.74 0.838673
Target:  5'- cCGUC-GUCGCUCugcAGGUGuuccgcCAGGCGGCa -3'
miRNA:   3'- -GCAGaUAGCGAGu--UUCAU------GUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 17249 0.71 0.949488
Target:  5'- uCGUCgGUCGCuUCAAAG-ACggucgucaacggAGGCGACg -3'
miRNA:   3'- -GCAGaUAGCG-AGUUUCaUG------------UCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 34764 0.71 0.953732
Target:  5'- cCG-CUGUCGCUacaCGAAGaugagccgcucaUGCGGGCGGCc -3'
miRNA:   3'- -GCaGAUAGCGA---GUUUC------------AUGUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 48383 0.7 0.974187
Target:  5'- gCGUCgaggCGCUCGAcGUucguCgAGGCGACg -3'
miRNA:   3'- -GCAGaua-GCGAGUUuCAu---G-UCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 6459 0.69 0.98353
Target:  5'- uCGUCg--CGCUCAGGGU-CAcGGUGAa -3'
miRNA:   3'- -GCAGauaGCGAGUUUCAuGU-CCGCUg -5'
24527 5' -49.7 NC_005264.1 + 117011 0.69 0.98353
Target:  5'- gGUCUG-CGCggcgCAugacGAGUACAGcGCGAUc -3'
miRNA:   3'- gCAGAUaGCGa---GU----UUCAUGUC-CGCUG- -5'
24527 5' -49.7 NC_005264.1 + 126929 0.69 0.98353
Target:  5'- gGUCUccUCGC-CGGAGUACugGGGgGACg -3'
miRNA:   3'- gCAGAu-AGCGaGUUUCAUG--UCCgCUG- -5'
24527 5' -49.7 NC_005264.1 + 37768 0.68 0.988657
Target:  5'- uCGUCUAagaaGCUCAAGG-ACucgAGGCGAg -3'
miRNA:   3'- -GCAGAUag--CGAGUUUCaUG---UCCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.