miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24528 3' -55.2 NC_005264.1 + 42350 0.66 0.925807
Target:  5'- uCGCCCCCGCcaccuACUCCGcGCAccgauGCGAu -3'
miRNA:   3'- uGCGGGGGUG-----UGGGGCuUGUuu---UGUU- -5'
24528 3' -55.2 NC_005264.1 + 43716 0.69 0.818122
Target:  5'- uGCGUCCUCGCccuCCCCcAGCAGAGCc- -3'
miRNA:   3'- -UGCGGGGGUGu--GGGGcUUGUUUUGuu -5'
24528 3' -55.2 NC_005264.1 + 45057 0.67 0.874581
Target:  5'- gAUGCCg-CGCAgUCCGAGCAGAACAAc -3'
miRNA:   3'- -UGCGGggGUGUgGGGCUUGUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 46422 0.71 0.703404
Target:  5'- gACGCCCCCAgcgacCugCCgCGGGCucAGCGAg -3'
miRNA:   3'- -UGCGGGGGU-----GugGG-GCUUGuuUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 47119 0.67 0.867133
Target:  5'- cGCGCCCCCuacCAUgCCGGAUGAcuugguGGCGAu -3'
miRNA:   3'- -UGCGGGGGu--GUGgGGCUUGUU------UUGUU- -5'
24528 3' -55.2 NC_005264.1 + 48550 0.66 0.925807
Target:  5'- cGCGCCCCCGuCGCCUucguCGuccGCAcAACAu -3'
miRNA:   3'- -UGCGGGGGU-GUGGG----GCu--UGUuUUGUu -5'
24528 3' -55.2 NC_005264.1 + 49143 0.69 0.809302
Target:  5'- gGCGCCUCUgcccaagccuuGCACCCCGAcCAucACGu -3'
miRNA:   3'- -UGCGGGGG-----------UGUGGGGCUuGUuuUGUu -5'
24528 3' -55.2 NC_005264.1 + 54241 0.69 0.77907
Target:  5'- gGCGgCCCCGCGCgCCaacgugucgaguggGAGCGGGGCGAg -3'
miRNA:   3'- -UGCgGGGGUGUGgGG--------------CUUGUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 54687 0.69 0.817248
Target:  5'- uACGCuCCCCGCGaggcucgacggccCCCCGAucccgGCGGAAUAc -3'
miRNA:   3'- -UGCG-GGGGUGU-------------GGGGCU-----UGUUUUGUu -5'
24528 3' -55.2 NC_005264.1 + 56008 0.68 0.859468
Target:  5'- -aGUCCCCAgAUUCCGAAUuAAACAGc -3'
miRNA:   3'- ugCGGGGGUgUGGGGCUUGuUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 58264 0.68 0.859468
Target:  5'- uACGCUucgagCCCGCuGCCuuGGACAGAGCu- -3'
miRNA:   3'- -UGCGG-----GGGUG-UGGggCUUGUUUUGuu -5'
24528 3' -55.2 NC_005264.1 + 64347 0.67 0.881094
Target:  5'- gGCGCCUCCggcagauacuuuaGCACCCC--ACGGAGCu- -3'
miRNA:   3'- -UGCGGGGG-------------UGUGGGGcuUGUUUUGuu -5'
24528 3' -55.2 NC_005264.1 + 64520 0.68 0.859468
Target:  5'- --cUCCCCAgCACCCUGGagagGCAAAGCAGu -3'
miRNA:   3'- ugcGGGGGU-GUGGGGCU----UGUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 64743 0.66 0.913847
Target:  5'- gUGCCCCgCGCaaggaucGCCCUGAuagauuuggccGCGAAACGAu -3'
miRNA:   3'- uGCGGGG-GUG-------UGGGGCU-----------UGUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 64797 0.69 0.772457
Target:  5'- aGCGCCCCCAUggGCaCCgGAagcGCAGGGCu- -3'
miRNA:   3'- -UGCGGGGGUG--UG-GGgCU---UGUUUUGuu -5'
24528 3' -55.2 NC_005264.1 + 66210 0.69 0.809302
Target:  5'- uGCGCCUCCGCGgCCagcgaaGGACuuGGCGAg -3'
miRNA:   3'- -UGCGGGGGUGUgGGg-----CUUGuuUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 67502 0.66 0.931123
Target:  5'- uCGgCCCCAUugCCuCGGaucacGCGAGACAc -3'
miRNA:   3'- uGCgGGGGUGugGG-GCU-----UGUUUUGUu -5'
24528 3' -55.2 NC_005264.1 + 76068 0.67 0.881806
Target:  5'- gACGCCgCgACGCCgCGAGCGucGACGg -3'
miRNA:   3'- -UGCGGgGgUGUGGgGCUUGUu-UUGUu -5'
24528 3' -55.2 NC_005264.1 + 80429 0.7 0.73356
Target:  5'- cUGCCCCCGCcagcuCUCCGGGCAuccAAACGu -3'
miRNA:   3'- uGCGGGGGUGu----GGGGCUUGU---UUUGUu -5'
24528 3' -55.2 NC_005264.1 + 82966 0.68 0.835236
Target:  5'- uCGCCgCCGCGCCCCcguGACGAAGg-- -3'
miRNA:   3'- uGCGGgGGUGUGGGGc--UUGUUUUguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.